# Error handling.
set -uex

# Create blast directory.
mkdir -p ~/db

# Download the latest blast database into this directory.
(cd ~/db && update_blastdb.pl --decompress Betacoronavirus)

# View the content of the blast database.
blastdbcmd -info -db ~/db/Betacoronavirus

# How many complete genomes in the Blast database?
blastdbcmd -db ~/db/Betacoronavirus -entry all -outfmt "%t" | grep "complete genome" | wc -l