# Program:featureCounts v1.6.4; Command:"featureCounts" "-p" "-a" "refs/features.gff" "-o" "counts.txt" "bam/BORED_1.bam" "bam/BORED_2.bam" "bam/BORED_3.bam" "bam/EXCITED_1.bam" "bam/EXCITED_2.bam" "bam/EXCITED_3.bam" Geneid Chr Start End Strand Length bam/BORED_1.bam bam/BORED_2.bam bam/BORED_3.bam bam/EXCITED_1.bam bam/EXCITED_2.bam bam/EXCITED_3.bam AAA-750000-UP-4 Golden 1 1060 + 1060 8103 13899 8825 69797 44913 57103 ABA-187500-UP-4 Golden 1560 2083 + 524 979 1426 1009 9199 6784 7358 ACA-46875-UP-4 Golden 2583 3616 + 1034 505 771 505 4456 3064 3669 ADA-23438-UP-4 Golden 4116 5138 + 1023 206 331 240 1920 1228 1669 AEA-11719-UP-4 Golden 5638 7629 + 1992 261 409 282 2113 1412 1967 AFA-5859-UP-4 Golden 8129 9253 + 1125 67 139 98 718 466 626 AGA-2930-UP-4 Golden 9753 10274 + 522 38 85 36 313 205 272 AHA-2930-UP-4 Golden 10774 11545 + 772 37 67 32 315 191 238 AIA-1465-UP-4 Golden 12045 13068 + 1024 23 32 13 199 111 150 AJA-732-UP-4 Golden 13568 14212 + 645 5 10 4 33 21 21 AKA-732-UP-4 Golden 14712 15250 + 539 1 3 6 20 12 11 ALA-366-UP-4 Golden 15750 16773 + 1024 2 4 7 46 26 36 AMA-183-UP-4 Golden 17273 17810 + 538 3 0 2 6 10 6 ANA-183-UP-4 Golden 18310 19154 + 845 3 9 2 20 8 16 APA-92-UP-4 Golden 19654 20784 + 1131 2 4 2 9 10 8 ARA-46-UP-4 Golden 21284 23306 + 2023 0 3 0 2 3 4 ASA-46-UP-4 Golden 23806 24080 + 275 0 0 1 1 0 1 ATA-23-UP-4 Golden 24580 25603 + 1024 0 1 0 1 1 0 AUA-11-UP-4 Golden 26103 26626 + 524 0 0 0 2 0 0 AVA-11-UP-4 Golden 27126 27620 + 495 0 0 0 0 0 1 AWA-6-UP-4 Golden 28120 29142 + 1023 0 0 0 0 0 2 AXA-3-UP-4 Golden 29642 30778 + 1137 0 0 0 0 0 1 AYA-1-UP-4 Golden 31278 32300 + 1023 0 0 0 0 0 0 BAB-1500000-SAME-1 Golden 32800 33907 + 1108 20676 34164 22770 44261 28653 36490 BBB-375000-SAME-1 Golden 34407 34912 + 506 1923 3247 2120 3816 2678 3366 BCB-93750-SAME-1 Golden 35412 36396 + 985 676 969 679 1410 928 1159 BDB-46875-SAME-1 Golden 36896 37919 + 1024 648 999 694 1490 1043 1244 BEB-23438-SAME-1 Golden 38419 38942 + 524 200 252 211 503 332 349 BFB-11719-SAME-1 Golden 39442 40572 + 1131 102 199 114 251 125 186 BGB-5859-SAME-1 Golden 41072 43066 + 1995 139 227 131 286 189 236 BHB-5859-SAME-1 Golden 43566 43840 + 275 5 2 4 12 9 7 BIB-2930-SAME-1 Golden 44340 45363 + 1024 24 50 35 53 49 61 BJB-1465-SAME-1 Golden 45863 46357 + 495 1 10 7 3 3 7 BKB-1465-SAME-1 Golden 46857 47975 + 1119 8 8 7 22 7 17 BLB-732-SAME-1 Golden 48475 49494 + 1020 15 40 24 42 21 37 BMB-366-SAME-1 Golden 49994 50737 + 744 1 7 2 5 9 4 BNB-366-SAME-1 Golden 51237 51881 + 645 1 1 2 7 0 3 BPB-183-SAME-1 Golden 52381 53519 + 1139 1 4 5 5 2 4 BRB-92-SAME-1 Golden 54019 54555 + 537 0 0 0 0 2 2 BSB-92-SAME-1 Golden 55055 55658 + 604 1 0 0 3 1 0 BTB-46-SAME-1 Golden 56158 57185 + 1028 1 1 2 1 2 2 BUB-23-SAME-1 Golden 57685 59707 + 2023 0 0 1 1 3 0 BVB-23-SAME-1 Golden 60207 60700 + 494 0 0 1 0 2 0 BWB-11-SAME-1 Golden 61200 62224 + 1025 1 0 0 0 1 0 BXB-6-SAME-1 Golden 62724 63860 + 1137 0 2 0 0 0 0 BYB-1-SAME-1 Golden 64360 65383 + 1024 0 0 0 0 0 0 CAC-2250000-DOWN-0.67 Golden 65883 66405 + 523 21129 32695 22967 31395 23370 26448 CBC-562500-DOWN-0.67 Golden 66905 67745 + 841 7022 11537 7817 9766 6570 8406 CCC-140625-DOWN-0.67 Golden 68245 69287 + 1043 1025 1729 1120 1530 1004 1246 CDC-70312-DOWN-0.67 Golden 69787 70781 + 995 1023 1633 1048 1322 959 1108 CEC-35156-DOWN-0.67 Golden 71281 71923 + 643 190 335 232 243 161 189 CFC-17578-DOWN-0.67 Golden 72423 73579 + 1157 203 407 264 367 193 253 CGC-8789-DOWN-0.67 Golden 74079 74602 + 524 47 77 52 95 66 59 CHC-8789-DOWN-0.67 Golden 75102 75744 + 643 82 125 75 124 66 96 CIC-4395-DOWN-0.67 Golden 76244 77238 + 995 58 95 67 87 47 67 CJC-2197-DOWN-0.67 Golden 77738 79088 + 1351 32 44 24 32 30 42 CKC-2197-DOWN-0.67 Golden 79588 79862 + 275 2 3 7 5 1 2 CLC-1099-DOWN-0.67 Golden 80362 81381 + 1020 21 28 22 29 23 21 CMC-549-DOWN-0.67 Golden 81881 82665 + 785 0 14 2 7 5 4 CNC-549-DOWN-0.67 Golden 83165 83905 + 741 2 6 6 7 3 2 CPC-275-DOWN-0.67 Golden 84405 85541 + 1137 2 11 9 4 4 5 CRC-137-DOWN-0.67 Golden 86041 86577 + 537 1 0 0 0 0 0 CSC-137-DOWN-0.67 Golden 87077 87821 + 745 0 4 1 1 0 2 CTC-69-DOWN-0.67 Golden 88321 89343 + 1023 0 4 1 0 2 2 CUC-34-DOWN-0.67 Golden 89843 90379 + 537 0 0 0 0 0 0 CVC-34-DOWN-0.67 Golden 90879 91723 + 845 1 1 0 0 0 1 CWC-17-DOWN-0.67 Golden 92223 93217 + 995 0 0 0 1 0 0 CXC-9-DOWN-0.67 Golden 93717 94860 + 1144 0 0 0 0 0 0 CYC-2-DOWN-0.67 Golden 95360 96381 + 1022 0 0 0 0 0 0 DAD-3000000-DOWN-0.5 Golden 96881 97942 + 1062 38059 63117 42220 40132 26119 34049 DBD-750000-DOWN-0.5 Golden 98442 98964 + 523 3119 4461 3181 3742 2447 2956 DCD-187500-DOWN-0.5 Golden 99464 100487 + 1024 2837 4193 3035 3531 2245 2732 DDD-93750-DOWN-0.5 Golden 100987 102010 + 1024 1711 2612 1884 2118 1462 1730 DED-46875-DOWN-0.5 Golden 102510 103261 + 752 299 468 336 362 183 275 DFD-23438-DOWN-0.5 Golden 103761 104897 + 1137 374 661 441 420 272 344 DGD-11719-DOWN-0.5 Golden 105397 106269 + 873 79 176 82 94 63 66 DHD-11719-DOWN-0.5 Golden 106769 107413 + 645 67 125 98 88 60 74 DID-5859-DOWN-0.5 Golden 107913 108906 + 994 74 122 99 76 59 67 DJD-2930-DOWN-0.5 Golden 109406 109949 + 544 16 20 24 11 11 15 DKD-2930-DOWN-0.5 Golden 110449 110974 + 526 17 31 32 27 19 17 DLD-1465-DOWN-0.5 Golden 111474 112217 + 744 18 46 27 23 21 19 DMD-732-DOWN-0.5 Golden 112717 114674 + 1958 18 17 12 22 6 12 DND-732-DOWN-0.5 Golden 115174 115447 + 274 1 0 0 0 2 1 DPD-366-DOWN-0.5 Golden 115947 117084 + 1138 2 14 6 5 4 7 DRD-183-DOWN-0.5 Golden 117584 118121 + 538 0 0 0 1 2 0 DSD-183-DOWN-0.5 Golden 118621 119429 + 809 2 4 0 3 2 0 DTD-92-DOWN-0.5 Golden 119929 120953 + 1025 2 1 1 2 3 3 DUD-46-DOWN-0.5 Golden 121453 122575 + 1123 0 2 2 1 1 0 DVD-46-DOWN-0.5 Golden 123075 123609 + 535 0 0 0 0 0 0 DWD-23-DOWN-0.5 Golden 124109 125129 + 1021 0 0 0 0 0 0 DXD-11-DOWN-0.5 Golden 125629 126765 + 1137 0 0 0 0 0 0 DYD-3-DOWN-0.5 Golden 127265 128257 + 993 0 0 0 0 0 0