aria2
bcftools
bedtools
bioawk
blast
bowtie2
bwa
csvkit
csvtk
datamash
emboss
fastp
fastqc
freebayes
hisat2
jq
mafft
make>4
minimap2
ncbi-datasets-cli
parallel
perl-text-csv
samtools>=1.14
seqkit
seqtk
snpeff==5.0
subread
trimmomatic
ucsc-bedgraphtobigwig
wget