wget
seqkit
csvkit
parallel
minimap2
bwa
bowtie2
emboss
r-base>=4
bedtools
samtools>=1.14
seqtk
datamash
bcftools
freebayes
subread
bioawk
hisat2
trimmomatic
fastqc
snpeff==5.0
blast
mafft
ucsc-bedgraphtobigwig
csvtk
fastp
perl-text-csv
aria2
ncbi-datasets-cli
jq