#
# IGV automation example
#

FASTA = https://data.biostarhandbook.com/courses/2026-appbio/igv/fasta/ebola-1976.fa

BAM = https://data.biostarhandbook.com/courses/2026-appbio/igv/bam/sample_1.bam

# Current directory
DIR = $(shell pwd)

# Netcat command to send commands to IGV
NC = nc localhost 60151

# --- All definitions above this line. All code below this line ---

# Visualize with IGV 
igv: 
	echo "new" | ${NC}
	echo "genome $(FASTA)" | ${NC}
	echo "load $(BAM)" | ${NC}