#!/usr/bin/env bash
set -euo pipefail

# Shortcut names for the bash startup files
BASH_RC=$HOME/.bashrc
BASH_PROF=$HOME/.bash_profile
BASH_SETTINGS=$HOME/.biostar.sh

# Create the files if they don't exist
touch $BASH_RC
touch $BASH_PROF

# Download the settings file
curl -fsSL http://data.biostarhandbook.com/setup/biostar.settings.2026.sh > ~/.biostar.sh

# Add source command to bashrc if it's not already there
grep -qxF "source $BASH_SETTINGS" $BASH_RC || {
  printf "\nsource $BASH_SETTINGS\n" >> $BASH_RC
}

# Add source command to bash_profile if it's not already there
grep -qxF "source $BASH_RC" $BASH_PROF || {
  printf "\nsource $BASH_RC\n" >> $BASH_PROF
}

# Make the bin directory if it doesn't exist
mkdir -p $HOME/bin

# Install the pixi tool.
curl -fsSL https://pixi.sh/install.sh | sh

echo "#"
echo "# Biostar Handbook setup completed."
echo "#" 
echo "# Close and reopen your terminal to apply the changes."
echo "#"