Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_012967 | 1,976,879 | T→G | 100% | intergenic (‑57/‑76) | hprR ← / → hiuH | response regulator transcription factor HprR/hydroxyisourate hydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_012967 | 1,976,879 | 0 | T | G | 100.0% | 32.6 / NA | 11 | intergenic (‑57/‑76) | hprR/hiuH | response regulator transcription factor HprR/hydroxyisourate hydrolase |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (8/3); total (8/3) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGCCGCT > NC_012967/1976848‑1976910 | gTTATAGAAACAGCCTGGTTCATTACAAAATGGTaa < 2:305431/36‑1 (MQ=38) aaaCAGCCTGGTTCATTACAAAATGGTAATgctgct > 2:155508/1‑36 (MQ=38) gCCTGGTTCATTACAAAATGGTAATGCTGCTGTAAg < 2:329790/36‑1 (MQ=38) cTGGTTCATTACAAAATGGTAATGCTGCTGTAAGGt > 1:45467/1‑36 (MQ=38) cTGGTTCATTACAAAATGGTAATGCTGCTGTAAGGt > 2:699077/1‑36 (MQ=38) tGGTTCATTACAAAATGGTAATGCTGCTGTAAGGtt > 1:690698/1‑36 (MQ=38) cATTACAAAATGGTAATGCTGCTGTAAGGTTACCCt > 2:338195/1‑36 (MQ=38) tACAAAATGGTAATGCTGCTGTAAGGTTACCCTGGc < 2:352755/36‑1 (MQ=38) tACAAAATGGTAATGCTGCTGTAAGGTTACCCCGGc > 2:753909/1‑36 (MQ=37) aaaTGGTAATGCTGCTGTAAGGTTACCCTGGCCGCt > 1:631669/1‑36 (MQ=38) aaaTGGTAATGCTACTGTAAGGTTACCCTGGCCGCt > 1:921569/1‑36 (MQ=37) | GTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGCCGCT > NC_012967/1976848‑1976910 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |