BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_012967 1,248,380 A→C 100% D295E (GAT→GAG dhaM ← dihydroxyacetone kinase subunit DhaM

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0129671,248,3800AC89.4% 16.7 / ‑5.0 9D295E (GAT→GAGdhaMdihydroxyacetone kinase subunit DhaM
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base C (3/5);  minor base T (1/0);  total (4/5)
Fisher's exact test for biased strand distribution p-value = 4.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CTGGCTTCTGCTTTCGCTGTTAACGTCATCAGATCTAATAACGTGAAGTCAATAGCCTGGCGT > NC_012967/1248348‑1248410
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cTGGCTTCTGCTTTCGCTGTTAACGTCATCAGctct > 1:490537/1‑36 (MQ=38)
cTGCTTTCGCTGTTAACGTCATCAGTTCtaataatg > 1:590347/1‑34 (MQ=37)
cTGCTTTAGATGTTAACGTCATCAGCTCTAATAACg < 1:237367/36‑1 (MQ=19)
ttcTTTCGCTGTTAACGTCATCAGCTCTAATAACGt < 1:390440/34‑1 (MQ=37)
ttCGCTGTTAACGTCATCAGCTCTAATAACGTGAAg > 1:225033/1‑36 (MQ=38)
ttCGCTGTTAACGTCATCAGCTCTAATAACGTGAAg < 1:749685/36‑1 (MQ=38)
gCTGTTAACGTCATCAGCTCTAATAACGCGAAGTCa > 2:887531/1‑36 (MQ=37)
gTTAACGTCATCAGCTCTAATAACGTGAAGTCAATa < 2:974576/36‑1 (MQ=38)
aCGTCATCAGCTCTAATAACGTGAAGTCAATAGCCt < 1:386732/36‑1 (MQ=255)
atcaGCTCTAATAACGTGAAGTCAATAGCCTGGCGt > 1:757064/1‑36 (MQ=38)
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CTGGCTTCTGCTTTCGCTGTTAACGTCATCAGATCTAATAACGTGAAGTCAATAGCCTGGCGT > NC_012967/1248348‑1248410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: