New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	3651091 =	NA (NA)	8 (0.830)	7/50	NT	NA	intergenic (‑33/‑47)	hokA/ECB_RS25190	type I toxin‑antitoxin system toxin HokA/IS3 family transposase
	?	NC_012967	= 3741531	NA (NA)					pseudogene (380/698 nt)	ECB_RS18445	IS1‑like element IS1A family transposase

TCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/3651125‑3651091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACG  <  NC_012967/3741531‑3741497                                                                        TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    >  1:15189/1‑36 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    >  2:312603/1‑36 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    <  2:445368/36‑1 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    <  2:452752/36‑1 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    >  2:59916/1‑36  CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGT                                   >  1:161687/1‑36     TTTCATCGTCCAACAAAATGGGTGCAGTACAGTATG                                <  1:460814/36‑1     TTTCATCGTCCAACAAAATGGGTGCAGTACAGAATG                                >  2:672282/1‑36         ATCGTCCAACAAAATGGGTGCAGTACAGTATGACAG                            <  1:555253/36‑1                AACAAAATGGGTGCAGTACAGTATGACAGTCTCCGG                     <  1:817230/36‑1                AACAAAATGGGTGCAGTACAGTATGACAGTCTCCGG                     >  1:805812/1‑36                     AATGGGTGCAGTACAGTATGACAGTCTCCGGAAGAC                >  1:619376/1‑36                     AATGGGTGCAGTACAGTATGACAGTATCCGGAAGAg                >  1:979132/1‑35                        GGGTGAAGTACAGTATGACAGTCTCCGGAAGACGGT             <  1:47554/36‑1                         GGTGCAGTACAGTATGACAGTCTCCGGAAGACGGTT            >  1:396138/1‑36                            GCAGTACAGTATGACAGTCTCCGGAAGACGGTTGTT         <  2:875621/36‑1                                   AGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACG  >  1:502166/1‑36                                   AGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACG  >  2:931912/1‑36                                                                        TCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/3651125‑3651091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACG  <  NC_012967/3741531‑3741497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.