| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 3651091 = | NA (NA) | 8 (0.830) | 7/50 | NT | NA | intergenic (‑33/‑47) | hokA/ECB_RS25190 | type I toxin‑antitoxin system toxin HokA/IS3 family transposase |
| ? | NC_012967 | = 3741531 | NA (NA) | pseudogene (380/698 nt) | ECB_RS18445 | IS1‑like element IS1A family transposase | |||||
CCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAA > NC_012967/3651061‑3651121 | ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt > 1:511609/1‑36 (MQ=255)ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt > 1:728188/1‑36 (MQ=255)ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt < 1:421149/36‑1 (MQ=255) ctGTGTTGATTTCCAACGAGTATGTACTGCACCCAt > 1:14735/1‑36 (MQ=255) gtgtTGATTTCCAACGAGTATGTACTGCACCCAttt > 1:534021/1‑36 (MQ=255) tgtTGATTTCCAGCGAGTATGTACTGCACCCAtttt < 1:988650/36‑1 (MQ=37) tgtTGATTTCCAACGAGTATGTACTGCACCCAtttt < 2:539508/36‑1 (MQ=255) gtTGATTTCCAACGAGTATGTACTGCACCCATTttg > 2:8909/1‑36 (MQ=255) gtTGATTTCCAACGAGTATGTACTGCACCCATTttg < 2:863181/36‑1 (MQ=255) aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg < 1:830107/36‑1 (MQ=255) aaCGAGTATGTACTGCACCCCTTTTGTTGGACGATg > 1:386779/1‑36 (MQ=18) aCGAGTATGTACTGCACCCATTTTGTTGGACGATGa > 1:92210/1‑36 (MQ=255) gAGTATGTACTGCACCCATTTTGTTGGACGATGaaa > 1:777365/1‑36 (MQ=255) gAGTATGTACTGCACCCATTTTGTTGGACGATGaaa > 1:786603/1‑36 (MQ=255) | CCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAA > NC_012967/3651061‑3651121 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |