| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 589884 = | NA (NA) | 4 (0.450) | 3/46 | NT | NA | pseudogene (384/698 nt) | ECB_RS23205 | IS1 family transposase |
| ? | NC_012967 | = 590469 | NA (NA) | intergenic (+24/‑74) | ECB_RS24845/hokE | IS3 family transposase/type I toxin‑antitoxin system toxin HokE | |||||
GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/589920‑589884‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTACTGACCCCAAAAAGTTGGACAGTTAAACA < NC_012967/590469‑590439 tCTAAATCGCGCCAGCTCTGGCTGTTTTACGCGTAT < 1:482160/35‑1gtTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 1:817986/34‑1GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 1:696479/36‑1GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 1:396906/36‑1GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 1:897801/36‑1GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 2:369870/36‑1GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 2:20968/36‑1GCTAAACCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 1:239609/36‑1 caAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 1:190962/34‑1 aTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 2:609887/35‑1 CTAAATCGCGCCCGCGCTGGCTGTTTTACGCGTATG > 2:385010/1‑36 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 2:659681/36‑1 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 1:701037/36‑1 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 2:366748/36‑1 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 1:413435/36‑1 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCCTATG > 1:758541/1‑36 CTAAATCACGCCAGCGCTGGCTGTTTTACGCGTATG < 1:851800/36‑1 AATCGCGCCAGCGCTGGCTGGTTTACGCGTATGTAa > 1:130144/1‑35 GCTGTTTTACGCGTATGTACTGACCCCAAAAAGTTG < 1:620173/36‑1 TGTTTTACGCGTATGTACTGACCCCAAAAAGTTGGA > 1:915481/1‑36 TTACGCGTGTGTACTGACCCCCAAAAGTTGGACAGT > 2:690904/1‑36 TTACGCGTATGTACTGACCCCAAAAAGTTGGACAct > 1:785057/1‑34 GTATGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 2:591026/1‑36 GTATGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:635345/36‑1 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/589920‑589884‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTACTGACCCCAAAAAGTTGGACAGTTAAACA < NC_012967/590469‑590439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |