New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	589884 =	NA (NA)	4 (0.450)	3/46	NT	NA	pseudogene (384/698 nt)	ECB_RS23205	IS1 family transposase
	?	NC_012967	= 590469	NA (NA)					intergenic (+24/‑74)	ECB_RS24845/hokE	IS3 family transposase/type I toxin‑antitoxin system toxin HokE

GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/589920‑589884 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTACTGACCCCAAAAAGTTGGACAGTTAAACA < NC_012967/590469‑590439 tCTAAATCGCGCCAGCTCTGGCTGTTTTACGCGTAT < 1:482160/35‑1 gtTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 1:817986/34‑1 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 1:696479/36‑1 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 1:396906/36‑1 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 1:897801/36‑1 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 2:369870/36‑1 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 2:20968/36‑1 GCTAAACCGCGCCAGCGCTGGCTGTTTTACGCGTAT < 1:239609/36‑1 caAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 1:190962/34‑1 aTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 2:609887/35‑1 CTAAATCGCGCCCGCGCTGGCTGTTTTACGCGTATG > 2:385010/1‑36 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 2:659681/36‑1 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 1:701037/36‑1 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 2:366748/36‑1 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG < 1:413435/36‑1 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCCTATG > 1:758541/1‑36 CTAAATCACGCCAGCGCTGGCTGTTTTACGCGTATG < 1:851800/36‑1 AATCGCGCCAGCGCTGGCTGGTTTACGCGTATGTAa > 1:130144/1‑35 GCTGTTTTACGCGTATGTACTGACCCCAAAAAGTTG < 1:620173/36‑1 TGTTTTACGCGTATGTACTGACCCCAAAAAGTTGGA > 1:915481/1‑36 TTACGCGTGTGTACTGACCCCCAAAAGTTGGACAGT > 2:690904/1‑36 TTACGCGTATGTACTGACCCCAAAAAGTTGGACAct > 1:785057/1‑34 GTATGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 2:591026/1‑36 GTATGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:635345/36‑1 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/589920‑589884 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTACTGACCCCAAAAAGTTGGACAGTTAAACA < NC_012967/590469‑590439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.