BRESEQ :: Evidence
New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 589884 =NA (NA)4 (0.450) 3/46 NT NA pseudogene (384/698 nt) ECB_RS23205 IS1 family transposase
?NC_012967 = 590469 NA (NA)intergenic (+24/‑74) ECB_RS24845/hokE IS3 family transposase/type I toxin‑antitoxin system toxin HokE

GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTT  >  NC_012967/590440‑590504
                             |                                   
gtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt                               <  1:607009/36‑1 (MQ=255)
   tAACTGTCCAACTTTTTGGGGTCAGTACACCCTggg                            <  1:341942/36‑1 (MQ=255)
       tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                        >  1:356644/1‑36 (MQ=255)
            atttttttGGGGTCAGTACACCCTGGGGCTGCCACt                   <  1:94614/33‑1 (MQ=255)
              cTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTcc                 >  1:429528/1‑36 (MQ=255)
                 tttGGGGTCAGTACACCCTGGGGCTGCCACTCCaaa              >  2:834647/1‑36 (MQ=255)
                 ttgggggTCAGTACCCCCTGGGGCTGCCACTCCaaa              <  1:320774/33‑1 (MQ=37)
                         cAGTACACCCTGGGGCTGCCACTCCAAACCCGAACa      >  2:130709/1‑36 (MQ=255)
                             acacCCTGGGGCTGCCACTCCAAACCCGAACAAttt  <  2:300547/36‑1 (MQ=255)
                             |                                   
GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTT  >  NC_012967/590440‑590504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.