New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | 589884 = | NA (NA) | 4 (0.450) | 3/46 | NT | NA | pseudogene (384/698 nt) | ECB_RS23205 | IS1 family transposase |
? | NC_012967 | = 590469 | NA (NA) | intergenic (+24/‑74) | ECB_RS24845/hokE | IS3 family transposase/type I toxin‑antitoxin system toxin HokE |
GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTT > NC_012967/590440‑590504 | gtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt < 1:607009/36‑1 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACACCCTggg < 1:341942/36‑1 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg > 1:356644/1‑36 (MQ=255) atttttttGGGGTCAGTACACCCTGGGGCTGCCACt < 1:94614/33‑1 (MQ=255) cTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTcc > 1:429528/1‑36 (MQ=255) tttGGGGTCAGTACACCCTGGGGCTGCCACTCCaaa > 2:834647/1‑36 (MQ=255) ttgggggTCAGTACCCCCTGGGGCTGCCACTCCaaa < 1:320774/33‑1 (MQ=37) cAGTACACCCTGGGGCTGCCACTCCAAACCCGAACa > 2:130709/1‑36 (MQ=255) acacCCTGGGGCTGCCACTCCAAACCCGAACAAttt < 2:300547/36‑1 (MQ=255) | GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTT > NC_012967/590440‑590504 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |