New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	589884 =	NA (NA)	4 (0.450)	3/46	NT	NA	pseudogene (384/698 nt)	ECB_RS23205	IS1 family transposase
	?	NC_012967	= 590469	NA (NA)					intergenic (+24/‑74)	ECB_RS24845/hokE	IS3 family transposase/type I toxin‑antitoxin system toxin HokE

GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTT  >  NC_012967/590440‑590504                              |                                    gtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt                               <  1:607009/36‑1 (MQ=255)    tAACTGTCCAACTTTTTGGGGTCAGTACACCCTggg                            <  1:341942/36‑1 (MQ=255)        tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                        >  1:356644/1‑36 (MQ=255)             atttttttGGGGTCAGTACACCCTGGGGCTGCCACt                   <  1:94614/33‑1 (MQ=255)               cTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTcc                 >  1:429528/1‑36 (MQ=255)                  tttGGGGTCAGTACACCCTGGGGCTGCCACTCCaaa              >  2:834647/1‑36 (MQ=255)                  ttgggggTCAGTACCCCCTGGGGCTGCCACTCCaaa              <  1:320774/33‑1 (MQ=37)                          cAGTACACCCTGGGGCTGCCACTCCAAACCCGAACa      >  2:130709/1‑36 (MQ=255)                              acacCCTGGGGCTGCCACTCCAAACCCGAACAAttt  <  2:300547/36‑1 (MQ=255)                              |                                    GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTT  >  NC_012967/590440‑590504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.