New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	1733645 =	0 (0.000)	14 (1.580)	13/46	NT	100%	coding (681/1413 nt)	pykF	pyruvate kinase PykF
	?	NC_012967	= 2775875	NA (NA)					intergenic (‑45/+204)	ECB_RS25125/cysH	IS3 family transposase/phosphoadenosine phosphosulfate reductase

GCCGTCAGAGGCTTCGAGGATTTCGTCGAAGTTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/1733681‑1733645 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < NC_012967/2775875‑2775841 GCCGTCAGAGGCTTCGAGGATTTCGTCGAAGTTGTT < 2:95388/36‑1 GTCAGAGGCTTCGAGGATTTCGTCGAAGTTGTTtta > 2:154502/1‑33 TCAGAGGCTTCGAGGATTTCGTCGAAGTTGTTGTtc > 2:556875/1‑34 CAGAGGCTGCGAGGATTTCGTCGAAGTTGTTGTACT < 1:381863/36‑1 AGAGGCTTCGAGGATTTCGTCGAAGTTGTTGTACTG < 2:284243/36‑1 GGCTTCGAGGATTTCGTCGAAGTTGTTGTACTGCAC < 2:314777/36‑1 GCTTCGAGGATTTCGTCGAAGTTGTTGTACTGCACC < 2:781527/36‑1 TTCGAGGATTTCGTCGAAGTTGTTGTACTGCACCCA > 2:544944/1‑36 CGAGGATTTCGTCGAAGTTGTTGTACTGCACCCATT < 2:968700/36‑1 GAGGATTTCGTCGAAGTTGTTGTACTGCACCCATTT > 2:589228/1‑36 AGGATTTCGTCGAAGTTGTTGTACTGCACCCATTTT < 1:817429/36‑1 AGGATTTCGTCGAAGTTGTTGTACTGCACCCACTTT > 2:762145/1‑36 TTCGTCGAAGTTGTTGTACTGCACCCATTTTGTTGG < 2:14550/36‑1 TTCGTCGAAGTTGTTGTACTGCACCCATTTTGTTGG < 2:649258/36‑1 TCGTCGAAGTTGTTGTACTGCACCCATTTTGTTGGA > 1:237377/1‑36 GTCGAAGTTGTTGTACTACACCCATTTTGTTGGACG > 1:428739/1‑36 TCGAAGTTGTTGTACTGCACCCATTTTGTTGGACGA > 1:703351/1‑36 CGAAGTTGTTGTACTGCACCCATTTTGTTGGACGAT > 1:669229/1‑36 GAAGTTGTTGTACTGCACCCATTTTGTTGGACGATG > 2:181002/1‑36 GTTGTACTGCACCCATTTTGTTGGACGATGAAATGG > 1:518720/1‑36 TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA > 1:798407/1‑36 TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA > 2:562385/1‑36 TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA < 1:725966/36‑1 TGTACTGCACCCATTTTGTTGGACAATGAAATGGAA > 1:961481/1‑36 TGTACAGCACCCATTTTGTTGGACGATGAAATGGAA < 2:408006/36‑1 GTACTGCACCCATTTTGTTGGACGATGAAATGGAgt < 1:168861/36‑3 GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 1:730833/36‑1 GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 2:258912/1‑36 GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 2:527704/1‑36 GCCGTCAGAGGCTTCGAGGATTTCGTCGAAGTTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/1733681‑1733645 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < NC_012967/2775875‑2775841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.