New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	1733645 =	0 (0.000)	14 (1.580)	13/46	NT	100%	coding (681/1413 nt)	pykF	pyruvate kinase PykF
	?	NC_012967	= 2775875	NA (NA)					intergenic (‑45/+204)	ECB_RS25125/cysH	IS3 family transposase/phosphoadenosine phosphosulfate reductase

ATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGT  >  NC_012967/2775851‑2775908                         |                                  aTCGTCCAACAAAATGGGGGTAGTACAGGTCGAttg                        >  2:485289/1‑34 (MQ=2)    gTCCAACAAAATGGGTGCAGTACAGGTTGATAGaaa                     <  1:156173/36‑1 (MQ=255)        aacaaAATGGGTGCAGTACAGGTTGATAGAAATATc                 >  1:894172/1‑36 (MQ=255)        aacaaAATGGGTGCAGTACAGGTTGATAGAAACATc                 >  2:578100/1‑36 (MQ=21)           aaaaTGGGTGCAGTACAGGTTGATAGAAATATcacc              >  1:101053/1‑33 (MQ=255)                    gCAGTACAGGTTGATAGAAATATCGCCTGGGGCttt     <  1:848925/36‑1 (MQ=255)                      aGTACAGGTTGATAGAAATATCGCCTGGGGGTTTTg   >  2:258623/1‑36 (MQ=37)                       gTACATGTTGATAGAAATATCGCCTGGGGCTTTTGt  <  1:374849/36‑1 (MQ=37)                         |                                  ATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGT  >  NC_012967/2775851‑2775908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.