| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 2774435 = | NA (NA) | 8 (0.870) | 7/48 | NT | 100% | intergenic (‑67/+26) | ECB_RS13765/ECB_RS25125 | type I toxin‑antitoxin system Hok family toxin/IS3 family transposase |
| ? | NC_012967 | = 3015774 | 0 (0.000) | coding (1195/1677 nt) | ECB_RS14885 | polysaccharide export protein | |||||
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/2774469‑2774435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAGTGAGGCTTCCTCCAGCTTTTGCAGCGAGAGAT < NC_012967/3015774‑3015739 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:263649/1‑36CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:490564/1‑36CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA < 2:526166/36‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAAAAGT < 1:396217/36‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAAAAGT > 2:289993/1‑36 TTAACTGTCCAACTTTTTGGGGTCAGTACAAAAGTG < 1:577402/36‑1 AACTGTCCAACTTTTTGGGGTCAGTACAAAAGTGAG > 2:231592/1‑36 CTGTCCAACTTTTTGGGGTCAGTACAAAAGTGAGGC < 1:544242/36‑1 TGTCCAACTTGTTGGGGTCAGTACAAAAGTGAGGCT < 1:848799/36‑1 TCCAACGTTTTGGGGTCAGTACAAAAGTGAGGCTTC < 2:756664/36‑1 GGGGTCAGTACAAAAGTGAGGCTTCCTCCAGCTctt > 1:652336/1‑33 GGGGTCAGTACAAAAGTGAGGCTTCATCCAGCTTTT > 1:681680/1‑36 GGTCAGTACAAAAGTGAGGCTTCCTCCAGCTTTTGC > 1:676952/1‑36 CAGTACAAAAGTGAGGCTTCCTCCAGCTTTTGCAGC < 2:127834/36‑1 ACAAAAGTGAGGCTTCCTCCAGCTTTTGCAGCGAGA < 2:372091/36‑1 CAAAAGTGAGGCTTCCTCCAGCTTTTGCAGCGAGAG < 2:328517/36‑1 AAAGTGAGGCTTCCTCCAGCTTTTGCAGCGAGAGAT > 1:188746/1‑36 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/2774469‑2774435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAGTGAGGCTTCCTCCAGCTTTTGCAGCGAGAGAT < NC_012967/3015774‑3015739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |