| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 2774435 = | NA (NA) | 8 (0.870) | 7/48 | NT | 100% | intergenic (‑67/+26) | ECB_RS13765/ECB_RS25125 | type I toxin‑antitoxin system Hok family toxin/IS3 family transposase |
| ? | NC_012967 | = 3015774 | 0 (0.000) | coding (1195/1677 nt) | ECB_RS14885 | polysaccharide export protein | |||||
ATCTCTCGCTGCAAAAGCTGGAGGAAGCCTCACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTG > NC_012967/3015739‑3015809 | aTCTCTCGCTGCAAAAGCTGGAGGAAGCCTCACTTT > 1:188746‑M2/1‑36 (MQ=255) ctctcGCTGCAAAAGCTGGAGGAAGCCTCACTTTtg < 2:328517‑M2/36‑3 (MQ=255) tctcGCTGCAAAAGCTGGAGGAAGCCTCACTTTtgt < 2:372091‑M2/36‑4 (MQ=255) catcgtccaacaaaatgggtgcagtaCACTTTCTGc > 1:791289‑M2/27‑36 (MQ=255) gCTGCAAAAGCTGGAGGAAGCCTCACTTTtgtactg < 2:127834‑M2/36‑8 (MQ=255) tccaacaaaatgggtgcagtaCACTTTCTGCCCAGt < 1:312984‑M2/15‑1 (MQ=255) gCAAAAGCTGGAGGAAGCCTCACTTTtgtactgacc > 1:676952‑M2/1‑26 (MQ=255) aagagctGGAGGAAGCCTCACTTTtgtactgacccc > 1:652336‑M2/4‑24 (MQ=255) aaaaGCTGGATGAAGCCTCACTTTtgtactgacccc > 1:681680‑M2/1‑24 (MQ=255) acaaaattggtgcagtaCACTTTCTGCCCAGTCATc < 2:173679‑M2/19‑1 (MQ=255) aaaatgggtgcagtaCACTTTCTGCCCAGTCATcca > 1:26606‑M2/16‑36 (MQ=255) tgggtgcagtaCACTTTCTGCCCAGTCATCCACCaa < 2:430658‑M2/25‑1 (MQ=255) gggtgcagtaCACTTTCTGCCCAGTCATCCACCaaa < 1:892269‑M2/26‑1 (MQ=255) ggtgcagtaCACTTTCTGCCCAGTCATCCAccaacg > 1:455081‑M2/10‑34 (MQ=255) gtgcagtaCACTTTCTGCCCAGTCATCCACCAaaga > 1:764288‑M2/9‑36 (MQ=255) gtgcagtaCACTTTCTGCCCAGTCATCCACCAaaga > 1:289823‑M2/9‑36 (MQ=255) gaAGCCTCACTTTtgtactgaccccaaaacgttgga < 2:756664‑M2/36‑24 (MQ=255) cagtaCACTTTCTGCCCAGTCATCCACCAaagaaga > 2:411315‑M2/6‑36 (MQ=255) cagtaCACTTTCTGCCCAGTCATCCACCAaagaaga < 1:91716‑M2/31‑1 (MQ=255) aGCCTCACTTTtgtactgaccccaacaagttggaca < 1:848799‑M2/36‑26 (MQ=255) gCCTCACTTTtgtactgaccccaaaaagttggacag < 1:544242‑M2/36‑27 (MQ=255) cTCACTTTtgtactgaccccaaaaagttggacagtt > 2:231592‑M2/1‑8 (MQ=255) cACTTTtgtactgaccccaaaaagttggacagttaa < 1:577402‑M2/36‑31 (MQ=255) CACTTTCTGCCCAGTCATCCACCAAAGACGAAGCCa > 2:796419‑M2/1‑36 (MQ=255) aCTTTtgtactgaccccaaaaagttggacagttaaa > 2:289993‑M2/1‑5 (MQ=255) aCTTTtgtactgaccccaaaaagttggacagttaaa < 1:396217‑M2/36‑32 (MQ=255) ACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAg < 1:77937‑M2/36‑1 (MQ=255) cTTTCTGCCCAGTCATCCACCAAAGAAGAagccagc > 2:922292/1‑36 (MQ=255) ttCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCt < 1:825625/36‑1 (MQ=255) ttgtactgaccccaaaaagttggacagttaaacacg < 2:526166‑M2/36‑36 (MQ=255) ttgtactgaccccaaaaagttggacagttaaacacg > 1:490564‑M2/1‑1 (MQ=255) ttgtactgaccccaaaaagttggacagttaaacacg > 1:263649‑M2/1‑1 (MQ=255) | ATCTCTCGCTGCAAAAGCTGGAGGAAGCCTCACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTG > NC_012967/3015739‑3015809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |