New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | = 2775875 | NA (NA) | 9 (1.020) | 7/46 | NT | 100% | intergenic (‑45/+204) | ECB_RS25125/cysH | IS3 family transposase/phosphoadenosine phosphosulfate reductase |
? | NC_012967 | 3015769 = | 0 (0.000) | coding (1190/1677 nt) | ECB_RS14885 | polysaccharide export protein |
ATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGT > NC_012967/2775851‑2775908 | aTCGTCCAACAAAATGGGGGTAGTACAGGTCGAttg > 2:485289/1‑34 (MQ=2) gTCCAACAAAATGGGTGCAGTACAGGTTGATAGaaa < 1:156173/36‑1 (MQ=255) aacaaAATGGGTGCAGTACAGGTTGATAGAAATATc > 1:894172/1‑36 (MQ=255) aacaaAATGGGTGCAGTACAGGTTGATAGAAACATc > 2:578100/1‑36 (MQ=21) aaaaTGGGTGCAGTACAGGTTGATAGAAATATcacc > 1:101053/1‑33 (MQ=255) gCAGTACAGGTTGATAGAAATATCGCCTGGGGCttt < 1:848925/36‑1 (MQ=255) aGTACAGGTTGATAGAAATATCGCCTGGGGGTTTTg > 2:258623/1‑36 (MQ=37) gTACATGTTGATAGAAATATCGCCTGGGGCTTTTGt < 1:374849/36‑1 (MQ=37) | ATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGT > NC_012967/2775851‑2775908 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |