New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	16972 =	0 (0.000)	9 (0.940)	3/50	NT	100%	intergenic (‑71/‑516)	mokC/nhaA	type I toxin‑antitoxin system toxin MokC/Na+/H+ antiporter NhaA
	?	NC_012967	588495 =	NA (NA)					intergenic (‑222/‑47)	ybdK/ECB_RS24840	YbdK family carboxylate‑amine ligase/IS3‑like element IS150 family transposase

ATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATG  >  NC_012967/588465‑588527                               |                                 aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                             >  2:815695/1‑36 (MQ=255)     aGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAc                         >  2:278458/1‑36 (MQ=255)          aaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt                    <  2:323453/36‑1 (MQ=255)              cGGGTGCAGCTTCAAGTTGTACTGCACCCATTttgt                <  2:480703/36‑1 (MQ=25)                 gTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg             >  1:46913/1‑36 (MQ=255)                  ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGa            <  2:498984/36‑1 (MQ=255)                            tgTTGTACTGCACCCATCTCGTTCGACGATGaaacc  >  1:678546/2‑34 (MQ=2)                               |                                 ATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATG  >  NC_012967/588465‑588527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.