BRESEQ :: Evidence
New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 1821523 =0 (0.000)10 (1.130) 9/46 NT 100% coding (577/1041 nt) ynjI DUF1266 domain‑containing protein
?NC_012967 = 2775875 NA (NA)intergenic (‑45/+204) ECB_RS25125/cysH IS3 family transposase/phosphoadenosine phosphosulfate reductase

ATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGT  >  NC_012967/2775851‑2775908
                        |                                 
aTCGTCCAACAAAATGGGGGTAGTACAGGTCGAttg                        >  2:485289/1‑34 (MQ=2)
   gTCCAACAAAATGGGTGCAGTACAGGTTGATAGaaa                     <  1:156173/36‑1 (MQ=255)
       aacaaAATGGGTGCAGTACAGGTTGATAGAAATATc                 >  1:894172/1‑36 (MQ=255)
       aacaaAATGGGTGCAGTACAGGTTGATAGAAACATc                 >  2:578100/1‑36 (MQ=21)
          aaaaTGGGTGCAGTACAGGTTGATAGAAATATcacc              >  1:101053/1‑33 (MQ=255)
                   gCAGTACAGGTTGATAGAAATATCGCCTGGGGCttt     <  1:848925/36‑1 (MQ=255)
                     aGTACAGGTTGATAGAAATATCGCCTGGGGGTTTTg   >  2:258623/1‑36 (MQ=37)
                      gTACATGTTGATAGAAATATCGCCTGGGGCTTTTGt  <  1:374849/36‑1 (MQ=37)
                        |                                 
ATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGT  >  NC_012967/2775851‑2775908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.