BRESEQ :: Evidence
New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 664690 =NA (NA)11 (1.240) 9/46 NT 100% intergenic (‑3/‑45) gltL/ECB_RS24860 glutamate/aspartate ABC transporter ATP‑binding protein GltL/IS3 family transposase
?NC_012967 1270658 = 0 (0.000)intergenic (‑165/+240) ECB_RS06335/chaA type I toxin‑antitoxin system toxin Ldr family protein/sodium‑potassium/proton antiporter ChaA

TTCCATTTCATCGTCCAACAAAATGGGTGCAGTAca‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/664723‑664690
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCGGATAATTCCGGCTTGGTGTGGATACT > NC_012967/1270658‑1270688

TTCCATTTCATCGTCCAACAAAATGGGTGCAGAACA > 2:212809/1‑36
CCATTTCATCGTCCAACAAAATGGGTGCAGTACACC < 1:821615/36‑1
CATTTCATCGTCCAACAAAATGGGTGCAGTACACCG < 2:228395/36‑1
CATTTCATCGTCCAACAAAATGGGTGCAGTACACCG > 1:834961/1‑36
GTCCAACAAAATGGGTGCAGTACACCGGATAATTCC < 1:527493/36‑1
TCCAACAAAATGGGTGCAGTACACCGGATAATTCCG < 1:333542/36‑1
ACAAAATGGGTGCAGTACACCGGATAATTTCGGCTT > 1:737801/1‑36
AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT < 2:604768/36‑1
AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT < 1:344623/36‑1
AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT > 2:165659/1‑36
AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG > 1:915287/1‑36
ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTct > 1:102094/1‑34
ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGT < 1:231710/36‑1
GGGTGCGGTACACCGGATAATTCCGGCTTGGTGTGG < 1:990305/36‑1
TGCAGTACACCGGATAATTCCGGCTTGGTGTGGATA > 2:577497/1‑36
CAGTACACCGGATAATTCCGGCTTGGTGTGGATAat > 1:771532/1‑34

TTCCATTTCATCGTCCAACAAAATGGGTGCAGTAca‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/664723‑664690
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCGGATAATTCCGGCTTGGTGTGGATACT > NC_012967/1270658‑1270688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.