New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | 664690 = | NA (NA) | 11 (1.240) | 9/46 | NT | 100% | intergenic (‑3/‑45) | gltL/ECB_RS24860 | glutamate/aspartate ABC transporter ATP‑binding protein GltL/IS3 family transposase |
? | NC_012967 | 1270658 = | 0 (0.000) | intergenic (‑165/+240) | ECB_RS06335/chaA | type I toxin‑antitoxin system toxin Ldr family protein/sodium‑potassium/proton antiporter ChaA |
TTCCATTTCATCGTCCAACAAAATGGGTGCAGTAca‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/664723‑664690 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCGGATAATTCCGGCTTGGTGTGGATACT > NC_012967/1270658‑1270688 TTCCATTTCATCGTCCAACAAAATGGGTGCAGAACA > 2:212809/1‑36 CCATTTCATCGTCCAACAAAATGGGTGCAGTACACC < 1:821615/36‑1 CATTTCATCGTCCAACAAAATGGGTGCAGTACACCG < 2:228395/36‑1 CATTTCATCGTCCAACAAAATGGGTGCAGTACACCG > 1:834961/1‑36 GTCCAACAAAATGGGTGCAGTACACCGGATAATTCC < 1:527493/36‑1 TCCAACAAAATGGGTGCAGTACACCGGATAATTCCG < 1:333542/36‑1 ACAAAATGGGTGCAGTACACCGGATAATTTCGGCTT > 1:737801/1‑36 AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT < 2:604768/36‑1 AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT < 1:344623/36‑1 AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT > 2:165659/1‑36 AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG > 1:915287/1‑36 ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTct > 1:102094/1‑34 ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGT < 1:231710/36‑1 GGGTGCGGTACACCGGATAATTCCGGCTTGGTGTGG < 1:990305/36‑1 TGCAGTACACCGGATAATTCCGGCTTGGTGTGGATA > 2:577497/1‑36 CAGTACACCGGATAATTCCGGCTTGGTGTGGATAat > 1:771532/1‑34 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTAca‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/664723‑664690 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCGGATAATTCCGGCTTGGTGTGGATACT > NC_012967/1270658‑1270688 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |