BRESEQ :: Evidence
New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 1460160 =NA (NA)9 (0.970) 7/48 NT 100% intergenic (‑115/‑55) gap/ECB_RS07290 type I glyceraldehyde‑3‑phosphate dehydrogenase/IS1 family transposase
?NC_012967 = 1604671 0 (0.000)coding (1212/2379 nt) ECB_RS07985 prophage tail fiber N‑terminal domain‑containing protein

ATCATACACTAAATCAGTAAGTTGGCAGCATCACCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/1460194‑1460160
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAACGCGCATCAGGTGCAACATACATTAATAAA  <  NC_012967/1604671‑1604638
                                                                     
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   <  1:743404/36‑1
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   >  1:480071/1‑36
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   >  1:313596/1‑36
  CATACACTAAATCAGTAAGTTGGCAGCATCACCCAA                                 <  1:957619/36‑1
         TAAATCAGTAAGTTGGCAGCATCACCCAAACGCGCA                          <  2:152191/36‑1
            ATCAGTAAGTTGGCAGCATCACCCAAACGCGCATCA                       <  1:171906/36‑1
             cCAGTAAGTTGGCAGCACCACCCAAACGCGCACCAG                      >  2:314629/2‑36
             TCAGTAAGTTGGCAGCATCACCCAAACGCGCATCAG                      <  1:611526/36‑1
             TCAGTAAGTTGGCAGCATCACCCAAACGCGCATCAG                      >  1:515710/1‑36
                 TAAGTTGGCAGCATCACCCAAACGCGCATCAGGTGC                  >  2:70087/1‑36
                         CAGCATCACCCAAACGCGCATCAGGTGCAACATACA          <  2:883412/36‑1
                          AGCATCACCCAAACGCGCATCAGGTGCAACATACAT         >  1:185627/1‑36
                          AGCATCACCCAAACGCGCATCAGGTGCAACATACAT         >  1:16452/1‑36
                                ACCCAAACGCGCATCAGGTGCAACATACATTAATAA   >  2:611538/1‑36
                                 CCCAAACGCGCATCAGGTGCAACATACATTAATAAA  >  1:990292/1‑36
                                                                     
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/1460194‑1460160
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAACGCGCATCAGGTGCAACATACATTAATAAA  <  NC_012967/1604671‑1604638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.