New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | 1460160 = | NA (NA) | 9 (0.970) | 7/48 | NT | 100% | intergenic (‑115/‑55) | gap/ECB_RS07290 | type I glyceraldehyde‑3‑phosphate dehydrogenase/IS1 family transposase |
? | NC_012967 | = 1604671 | 0 (0.000) | coding (1212/2379 nt) | ECB_RS07985 | prophage tail fiber N‑terminal domain‑containing protein |
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/1460194‑1460160 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAACGCGCATCAGGTGCAACATACATTAATAAA < NC_012967/1604671‑1604638 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC < 1:743404/36‑1 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC > 1:480071/1‑36 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC > 1:313596/1‑36 CATACACTAAATCAGTAAGTTGGCAGCATCACCCAA < 1:957619/36‑1 TAAATCAGTAAGTTGGCAGCATCACCCAAACGCGCA < 2:152191/36‑1 ATCAGTAAGTTGGCAGCATCACCCAAACGCGCATCA < 1:171906/36‑1 cCAGTAAGTTGGCAGCACCACCCAAACGCGCACCAG > 2:314629/2‑36 TCAGTAAGTTGGCAGCATCACCCAAACGCGCATCAG < 1:611526/36‑1 TCAGTAAGTTGGCAGCATCACCCAAACGCGCATCAG > 1:515710/1‑36 TAAGTTGGCAGCATCACCCAAACGCGCATCAGGTGC > 2:70087/1‑36 CAGCATCACCCAAACGCGCATCAGGTGCAACATACA < 2:883412/36‑1 AGCATCACCCAAACGCGCATCAGGTGCAACATACAT > 1:185627/1‑36 AGCATCACCCAAACGCGCATCAGGTGCAACATACAT > 1:16452/1‑36 ACCCAAACGCGCATCAGGTGCAACATACATTAATAA > 2:611538/1‑36 CCCAAACGCGCATCAGGTGCAACATACATTAATAAA > 1:990292/1‑36 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/1460194‑1460160 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAACGCGCATCAGGTGCAACATACATTAATAAA < NC_012967/1604671‑1604638 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |