New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	1460160 =	NA (NA)	9 (0.970)	7/48	NT	100%	intergenic (‑115/‑55)	gap/ECB_RS07290	type I glyceraldehyde‑3‑phosphate dehydrogenase/IS1 family transposase
	?	NC_012967	= 1604671	0 (0.000)					coding (1212/2379 nt)	ECB_RS07985	prophage tail fiber N‑terminal domain‑containing protein

ATCATACACTAAATCAGTAAGTTGGCAGCATCACCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/1460194‑1460160 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAACGCGCATCAGGTGCAACATACATTAATAAA  <  NC_012967/1604671‑1604638                                                                       ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   <  1:743404/36‑1 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   >  1:480071/1‑36 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   >  1:313596/1‑36   CATACACTAAATCAGTAAGTTGGCAGCATCACCCAA                                 <  1:957619/36‑1          TAAATCAGTAAGTTGGCAGCATCACCCAAACGCGCA                          <  2:152191/36‑1             ATCAGTAAGTTGGCAGCATCACCCAAACGCGCATCA                       <  1:171906/36‑1              cCAGTAAGTTGGCAGCACCACCCAAACGCGCACCAG                      >  2:314629/2‑36              TCAGTAAGTTGGCAGCATCACCCAAACGCGCATCAG                      <  1:611526/36‑1              TCAGTAAGTTGGCAGCATCACCCAAACGCGCATCAG                      >  1:515710/1‑36                  TAAGTTGGCAGCATCACCCAAACGCGCATCAGGTGC                  >  2:70087/1‑36                          CAGCATCACCCAAACGCGCATCAGGTGCAACATACA          <  2:883412/36‑1                           AGCATCACCCAAACGCGCATCAGGTGCAACATACAT         >  1:185627/1‑36                           AGCATCACCCAAACGCGCATCAGGTGCAACATACAT         >  1:16452/1‑36                                 ACCCAAACGCGCATCAGGTGCAACATACATTAATAA   >  2:611538/1‑36                                  CCCAAACGCGCATCAGGTGCAACATACATTAATAAA  >  1:990292/1‑36                                                                       ATCATACACTAAATCAGTAAGTTGGCAGCATCACCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/1460194‑1460160 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAACGCGCATCAGGTGCAACATACATTAATAAA  <  NC_012967/1604671‑1604638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.