New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | 1460160 = | NA (NA) | 9 (0.970) | 7/48 | NT | 100% | intergenic (‑115/‑55) | gap/ECB_RS07290 | type I glyceraldehyde‑3‑phosphate dehydrogenase/IS1 family transposase |
? | NC_012967 | = 1604671 | 0 (0.000) | coding (1212/2379 nt) | ECB_RS07985 | prophage tail fiber N‑terminal domain‑containing protein |
ATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGA > NC_012967/1460126‑1460193 | aTTCTCACAGTGAAACGTAACGTACTGAAAACgggg > 1:999801/1‑36 (MQ=255) ttCTCACAGTGAAACGTAACGTACTGAAAACGGGGt < 1:49406/36‑1 (MQ=255) tctcACAGTGAAACGTAACGTACTGAAAACGGGGTg > 1:490362/1‑36 (MQ=255) cacaGTGAAACGTAACGTACTGAAAACGGGGTGAtg < 1:912043/36‑1 (MQ=255) cacaGTGAAACGTAACGTACTGAAAACGGGGTGAtg < 2:176128/36‑1 (MQ=255) cacaGTGAAACGTAACGTACTGAAAACGGGGTGAtg < 2:543437/36‑1 (MQ=255) caGTGAAACGTAACGTACTGAAAACGGGGTGAtgct < 2:93170/36‑1 (MQ=255) aaGTGAAACGTAACGTACTGAAAACGGGGTGAtgct < 1:278665/35‑1 (MQ=255) aGTGAAACGTAACGTACTGAAAACGGGGTGAtgctg < 2:771468/36‑1 (MQ=255) gTGAAACGTAACGTACTGAAAACGGGGTGAtgctgc > 2:899320/1‑36 (MQ=255) acgtaacgtaCTGAAAACGGGGTGATGCTGCCAACt < 1:972376/36‑1 (MQ=255) cgtaCTGAAAACGGGGTGATGCTGCTAACTTTCTgt > 1:807673/1‑35 (MQ=25) aaaCGGGGTGATGCTGCCAACTTACTGATTTAgtgt > 1:533866/1‑36 (MQ=255) aaaCGGGGTGATGCTGCCAACTTACTGATTAAgtgt > 2:218819/1‑36 (MQ=17) aaaCGGGGTGATGCTGCCAACTCACTGATATAgtgt > 1:987707/1‑36 (MQ=17) agcGGGGTGATGCTGCCAACTTACTGATTTAGTGTa < 1:222288/34‑1 (MQ=255) aCGGGGTGATGCTGCCAACTTATTGATTTAGTGTat > 1:201879/1‑36 (MQ=14) cGGGGTGATGCTGCCAACTTACTGATTTAGTGTatg < 2:82924/36‑1 (MQ=37) ggggTGATGCTGCCAACTTACTGATTTAGTGTatga > 1:949861/1‑36 (MQ=33) ggggTGATGCTGCCAACTTACTGATTTAGTGTatga > 1:586776/1‑36 (MQ=33) | ATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGA > NC_012967/1460126‑1460193 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |