New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	1460160 =	NA (NA)	9 (0.970)	7/48	NT	100%	intergenic (‑115/‑55)	gap/ECB_RS07290	type I glyceraldehyde‑3‑phosphate dehydrogenase/IS1 family transposase
	?	NC_012967	= 1604671	0 (0.000)					coding (1212/2379 nt)	ECB_RS07985	prophage tail fiber N‑terminal domain‑containing protein

ATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  >  NC_012967/1460126‑1460193                                   |                                  aTTCTCACAGTGAAACGTAACGTACTGAAAACgggg                                  >  1:999801/1‑36 (MQ=255)  ttCTCACAGTGAAACGTAACGTACTGAAAACGGGGt                                 <  1:49406/36‑1 (MQ=255)   tctcACAGTGAAACGTAACGTACTGAAAACGGGGTg                                >  1:490362/1‑36 (MQ=255)      cacaGTGAAACGTAACGTACTGAAAACGGGGTGAtg                             <  1:912043/36‑1 (MQ=255)      cacaGTGAAACGTAACGTACTGAAAACGGGGTGAtg                             <  2:176128/36‑1 (MQ=255)      cacaGTGAAACGTAACGTACTGAAAACGGGGTGAtg                             <  2:543437/36‑1 (MQ=255)        caGTGAAACGTAACGTACTGAAAACGGGGTGAtgct                           <  2:93170/36‑1 (MQ=255)        aaGTGAAACGTAACGTACTGAAAACGGGGTGAtgct                           <  1:278665/35‑1 (MQ=255)         aGTGAAACGTAACGTACTGAAAACGGGGTGAtgctg                          <  2:771468/36‑1 (MQ=255)          gTGAAACGTAACGTACTGAAAACGGGGTGAtgctgc                         >  2:899320/1‑36 (MQ=255)               acgtaacgtaCTGAAAACGGGGTGATGCTGCCAACt                    <  1:972376/36‑1 (MQ=255)                     cgtaCTGAAAACGGGGTGATGCTGCTAACTTTCTgt              >  1:807673/1‑35 (MQ=25)                             aaaCGGGGTGATGCTGCCAACTTACTGATTTAgtgt      >  1:533866/1‑36 (MQ=255)                             aaaCGGGGTGATGCTGCCAACTTACTGATTAAgtgt      >  2:218819/1‑36 (MQ=17)                             aaaCGGGGTGATGCTGCCAACTCACTGATATAgtgt      >  1:987707/1‑36 (MQ=17)                              agcGGGGTGATGCTGCCAACTTACTGATTTAGTGTa     <  1:222288/34‑1 (MQ=255)                               aCGGGGTGATGCTGCCAACTTATTGATTTAGTGTat    >  1:201879/1‑36 (MQ=14)                                cGGGGTGATGCTGCCAACTTACTGATTTAGTGTatg   <  2:82924/36‑1 (MQ=37)                                 ggggTGATGCTGCCAACTTACTGATTTAGTGTatga  >  1:949861/1‑36 (MQ=33)                                 ggggTGATGCTGCCAACTTACTGATTTAGTGTatga  >  1:586776/1‑36 (MQ=33)                                   |                                  ATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  >  NC_012967/1460126‑1460193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.