BRESEQ :: Evidence
New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 1460160 =NA (NA)9 (0.970) 7/48 NT 100% intergenic (‑115/‑55) gap/ECB_RS07290 type I glyceraldehyde‑3‑phosphate dehydrogenase/IS1 family transposase
?NC_012967 = 1604671 0 (0.000)coding (1212/2379 nt) ECB_RS07985 prophage tail fiber N‑terminal domain‑containing protein

TTTATTAATGTATGTTGCACCTGATGCGCGTTTGAAGCTAACAACCTTATCGGATGGCATTTTAATAAC  >  NC_012967/1604638‑1604706
                                 |                                   
tttATTAATGTATGTTGCACCTGATGCGCGTTTGgg                                   >  1:990292‑M2/1‑34 (MQ=255)
 ttattaATGTATGTTGCACCTGATGCGCGTTTGggt                                  >  2:611538‑M2/1‑33 (MQ=255)
       atgtatgtTGCACCTGATGCGCGTTTGggtgatgct                            >  1:16452‑M2/1‑27 (MQ=255)
       atgtatgtTGCACCTGATGCGCGTTTGggtgatgct                            >  1:185627‑M2/1‑27 (MQ=255)
        tgtatgtTGCACCTGATGCGCGTTTGggtgatgctg                           <  2:883412‑M2/36‑11 (MQ=255)
                gCACCTGATGCGCGTTTGggtgatgctgccaactta                   >  2:70087‑M2/1‑18 (MQ=255)
                    cTGGTGCGCGTTTGggtggtgctgccaacttactgg               >  2:314629‑M2/1‑14 (MQ=255)
                    cTGATGCGCGTTTGggtgatgctgccaacttactga               >  1:515710‑M2/1‑14 (MQ=255)
                    cTGATGCGCGTTTGggtgatgctgccaacttactga               <  1:611526‑M2/36‑23 (MQ=255)
                     tGATGCGCGTTTGggtgatgctgccaacttactgat              <  1:171906‑M2/36‑24 (MQ=255)
                        tGCGCGTTTGggtgatgctgccaacttactgattta           <  2:152191‑M2/36‑27 (MQ=255)
                               ttGggtgatgctgccaacttactgatttagtgtatg    <  1:957619‑M2/36‑34 (MQ=255)
                                 gggtgatgctgccaacttactgatttagtgtatgat  >  1:313596‑M2/1‑1 (MQ=255)
                                 gggtgatgctgccaacttactgatttagtgtatgat  >  1:480071‑M2/1‑1 (MQ=255)
                                 gggtgatgctgccaacttactgatttagtgtatgat  <  1:743404‑M2/36‑36 (MQ=255)
                                 |                                   
TTTATTAATGTATGTTGCACCTGATGCGCGTTTGAAGCTAACAACCTTATCGGATGGCATTTTAATAAC  >  NC_012967/1604638‑1604706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.