New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | 1460160 = | NA (NA) | 9 (0.970) | 7/48 | NT | 100% | intergenic (‑115/‑55) | gap/ECB_RS07290 | type I glyceraldehyde‑3‑phosphate dehydrogenase/IS1 family transposase |
? | NC_012967 | = 1604671 | 0 (0.000) | coding (1212/2379 nt) | ECB_RS07985 | prophage tail fiber N‑terminal domain‑containing protein |
TTTATTAATGTATGTTGCACCTGATGCGCGTTTGAAGCTAACAACCTTATCGGATGGCATTTTAATAAC > NC_012967/1604638‑1604706 | tttATTAATGTATGTTGCACCTGATGCGCGTTTGgg > 1:990292‑M2/1‑34 (MQ=255) ttattaATGTATGTTGCACCTGATGCGCGTTTGggt > 2:611538‑M2/1‑33 (MQ=255) atgtatgtTGCACCTGATGCGCGTTTGggtgatgct > 1:16452‑M2/1‑27 (MQ=255) atgtatgtTGCACCTGATGCGCGTTTGggtgatgct > 1:185627‑M2/1‑27 (MQ=255) tgtatgtTGCACCTGATGCGCGTTTGggtgatgctg < 2:883412‑M2/36‑11 (MQ=255) gCACCTGATGCGCGTTTGggtgatgctgccaactta > 2:70087‑M2/1‑18 (MQ=255) cTGGTGCGCGTTTGggtggtgctgccaacttactgg > 2:314629‑M2/1‑14 (MQ=255) cTGATGCGCGTTTGggtgatgctgccaacttactga > 1:515710‑M2/1‑14 (MQ=255) cTGATGCGCGTTTGggtgatgctgccaacttactga < 1:611526‑M2/36‑23 (MQ=255) tGATGCGCGTTTGggtgatgctgccaacttactgat < 1:171906‑M2/36‑24 (MQ=255) tGCGCGTTTGggtgatgctgccaacttactgattta < 2:152191‑M2/36‑27 (MQ=255) ttGggtgatgctgccaacttactgatttagtgtatg < 1:957619‑M2/36‑34 (MQ=255) gggtgatgctgccaacttactgatttagtgtatgat > 1:313596‑M2/1‑1 (MQ=255) gggtgatgctgccaacttactgatttagtgtatgat > 1:480071‑M2/1‑1 (MQ=255) gggtgatgctgccaacttactgatttagtgtatgat < 1:743404‑M2/36‑36 (MQ=255) | TTTATTAATGTATGTTGCACCTGATGCGCGTTTGAAGCTAACAACCTTATCGGATGGCATTTTAATAAC > NC_012967/1604638‑1604706 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |