New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	1460160 =	NA (NA)	9 (0.970)	7/48	NT	100%	intergenic (‑115/‑55)	gap/ECB_RS07290	type I glyceraldehyde‑3‑phosphate dehydrogenase/IS1 family transposase
	?	NC_012967	= 1604671	0 (0.000)					coding (1212/2379 nt)	ECB_RS07985	prophage tail fiber N‑terminal domain‑containing protein

TTTATTAATGTATGTTGCACCTGATGCGCGTTTGAAGCTAACAACCTTATCGGATGGCATTTTAATAAC  >  NC_012967/1604638‑1604706                                  |                                    tttATTAATGTATGTTGCACCTGATGCGCGTTTGgg                                   >  1:990292‑M2/1‑34 (MQ=255)  ttattaATGTATGTTGCACCTGATGCGCGTTTGggt                                  >  2:611538‑M2/1‑33 (MQ=255)        atgtatgtTGCACCTGATGCGCGTTTGggtgatgct                            >  1:16452‑M2/1‑27 (MQ=255)        atgtatgtTGCACCTGATGCGCGTTTGggtgatgct                            >  1:185627‑M2/1‑27 (MQ=255)         tgtatgtTGCACCTGATGCGCGTTTGggtgatgctg                           <  2:883412‑M2/36‑11 (MQ=255)                 gCACCTGATGCGCGTTTGggtgatgctgccaactta                   >  2:70087‑M2/1‑18 (MQ=255)                     cTGGTGCGCGTTTGggtggtgctgccaacttactgg               >  2:314629‑M2/1‑14 (MQ=255)                     cTGATGCGCGTTTGggtgatgctgccaacttactga               >  1:515710‑M2/1‑14 (MQ=255)                     cTGATGCGCGTTTGggtgatgctgccaacttactga               <  1:611526‑M2/36‑23 (MQ=255)                      tGATGCGCGTTTGggtgatgctgccaacttactgat              <  1:171906‑M2/36‑24 (MQ=255)                         tGCGCGTTTGggtgatgctgccaacttactgattta           <  2:152191‑M2/36‑27 (MQ=255)                                ttGggtgatgctgccaacttactgatttagtgtatg    <  1:957619‑M2/36‑34 (MQ=255)                                  gggtgatgctgccaacttactgatttagtgtatgat  >  1:313596‑M2/1‑1 (MQ=255)                                  gggtgatgctgccaacttactgatttagtgtatgat  >  1:480071‑M2/1‑1 (MQ=255)                                  gggtgatgctgccaacttactgatttagtgtatgat  <  1:743404‑M2/36‑36 (MQ=255)                                  |                                    TTTATTAATGTATGTTGCACCTGATGCGCGTTTGAAGCTAACAACCTTATCGGATGGCATTTTAATAAC  >  NC_012967/1604638‑1604706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.