| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 1733649 | 0 (0.000) | 7 (0.730) | 7/50 | NT | 100% | coding (685/1413 nt) | pykF | pyruvate kinase PykF |
| ? | NC_012967 | 2774435 = | NA (NA) | intergenic (‑67/+26) | ECB_RS13765/ECB_RS25125 | type I toxin‑antitoxin system Hok family toxin/IS3 family transposase | |||||
TCCAAAATCGAAAACCAGGAAGGCCTCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/1733619‑1733649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACG > NC_012967/2774435‑2774469 TCCAAAATCGAAAACCAGGAAGGCCTCAACATGTAC > 1:802586/1‑36 CCAAAATCGAAAACCAGGAAGGCCTCAACATGTACT > 2:988009/1‑36 AATCGAAAACCAGGAAGGCCTCAACATGTACTGACC > 2:429035/1‑36 ATCGAAAACCAGGAAGGCCTCAACATGTACTGACCC < 1:691462/36‑1 AAAACCAGGAAGGCCTCAACATGTACTGACCCCAAA < 2:323199/36‑1 AGGAGGGCCTCAACATGTACTGACCCCAAAAAGTTG < 1:589780/36‑1 AGGAAGGTCTCAACATGTACTGACACCAAAAAGTTG > 2:279697/1‑36 GGAAGGCCTCAACATGTACTGACCCCAAAAAGTTGG < 1:651316/36‑1 ATGTACTGACCCCAAAAAGTTGGACAGTTAAACACG > 2:632853/1‑36 TCCAAAATCGAAAACCAGGAAGGCCTCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/1733619‑1733649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACG > NC_012967/2774435‑2774469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |