| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 1733649 | 0 (0.000) | 7 (0.730) | 7/50 | NT | 100% | coding (685/1413 nt) | pykF | pyruvate kinase PykF |
| ? | NC_012967 | 2774435 = | NA (NA) | intergenic (‑67/+26) | ECB_RS13765/ECB_RS25125 | type I toxin‑antitoxin system Hok family toxin/IS3 family transposase | |||||
TCCAAAATCGAAAACCAGGAAGGCCTCAACAACTTCGACGAAATCCTCGAAGCCTCTGACGGCATC > NC_012967/1733619‑1733684 | tcCAAAATCGAAAACCAGGAAGGCCTCAACAtgtac > 1:802586‑M1/1‑31 (MQ=255)catcgtccaacaaaatgggtgcagtaCAACAACTTc > 2:181002‑M1/27‑36 (MQ=255) ccAAAATCGAAAACCAGGAAGGCCTCAACAtgtact > 2:988009‑M1/1‑30 (MQ=255) atcgtccaacaaaatgggtgcagtaCAACAACTTcg > 1:669229‑M1/26‑36 (MQ=255) tcgtccaacaaaatgggtgcagtaCAACAACTTcga > 1:703351‑M1/25‑36 (MQ=255) cgtccaacaaaatgggtgtagtaCAACAACTTcgac > 1:428739‑M1/24‑36 (MQ=255) tccaacaaaatgggtgcagtaCAACAACTTcgacga > 1:237377‑M1/22‑36 (MQ=255) aaTCGAAAACCAGGAAGGCCTCAACAtgtactgacc > 2:429035‑M1/1‑26 (MQ=255) ccaacaaaatgggtgcagtaCAACAACTTCGACGaa < 2:14550‑M1/16‑1 (MQ=255) ccaacaaaatgggtgcagtaCAACAACTTCGACGaa < 2:649258‑M1/16‑1 (MQ=255) aTCGAAAACCAGGAAGGCCTCAACAtgtactgaccc < 1:691462‑M1/36‑12 (MQ=255) aaaaCCAGGAAGGCCTCAACAtgtactgaccccaaa < 2:323199‑M1/36‑16 (MQ=255) aaagtgggtgcagtaCAACAACTTCGACGAAATCCt > 2:762145‑M1/16‑36 (MQ=255) aaaatgggtgcagtaCAACAACTTCGACGAAATCCt < 1:817429‑M1/21‑1 (MQ=255) aaatgggtgcagtaCAACAACTTCGACGAAATCCTc > 2:589228‑M1/15‑36 (MQ=255) aatgggtgcagtaCAACAACTTCGACGAAATCCTCg < 2:968700‑M1/23‑1 (MQ=255) tgggtgcagtaCAACAACTTCGACGAAATCCTCGaa > 2:544944‑M1/12‑36 (MQ=255) aggaggGCCTCAACAtgtactgaccccaaaaagttg < 1:589780‑M1/36‑22 (MQ=255) aGGAAGGTCTCAACAtgtactgacaccaaaaagttg > 2:279697‑M1/1‑15 (MQ=255) ggtgcagtaCAACAACTTCGACGAAATCCTCGAAGc < 2:781527‑M1/27‑1 (MQ=255) ggAAGGCCTCAACAtgtactgaccccaaaaagttgg < 1:651316‑M1/36‑23 (MQ=255) gtgcagtaCAACAACTTCGACGAAATCCTCGAAGcc < 2:314777‑M1/28‑1 (MQ=255) cagtaCAACAACTTCGACGAAATCCTCGAAGCctct < 2:284243‑M1/31‑1 (MQ=255) agtaCAACAACTTCGACGAAATCCTCGCAGCCTCTg < 1:381863‑M1/32‑1 (MQ=255) gaaCAACAACTTCGACGAAATCCTCGAAGCCTCTGa > 2:556875‑M1/4‑36 (MQ=255) taaAACAACTTCGACGAAATCCTCGAAGCCTCTGAc > 2:154502‑M1/4‑36 (MQ=255) AACAACTTCGACGAAATCCTCGAAGCCTCTGACGGc < 2:95388‑M1/36‑1 (MQ=255) acaacTTCGACGAAATCCTCGAAGCCTCTGACGGca > 2:715940/1‑36 (MQ=255) caacTTCGACGAAATCCTCGAAGCCTCTGACGGcat < 1:324202/36‑1 (MQ=255) atgtactgaccccaaaaagttggacagttaaacacg > 2:632853‑M1/1‑1 (MQ=255) aacTTCGACGAAATCCTCGAAGCCTCTGACGGcatc > 1:346493/1‑36 (MQ=255) | TCCAAAATCGAAAACCAGGAAGGCCTCAACAACTTCGACGAAATCCTCGAAGCCTCTGACGGCATC > NC_012967/1733619‑1733684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |