BRESEQ :: Evidence
New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 = 17336490 (0.000)7 (0.730) 7/50 NT 100% coding (685/1413 nt) pykF pyruvate kinase PykF
?NC_012967 2774435 = NA (NA)intergenic (‑67/+26) ECB_RS13765/ECB_RS25125 type I toxin‑antitoxin system Hok family toxin/IS3 family transposase

TCCAAAATCGAAAACCAGGAAGGCCTCAACAACTTCGACGAAATCCTCGAAGCCTCTGACGGCATC  >  NC_012967/1733619‑1733684
                              |                                   
tcCAAAATCGAAAACCAGGAAGGCCTCAACAtgtac                                >  1:802586‑M1/1‑31 (MQ=255)
catcgtccaacaaaatgggtgcagtaCAACAACTTc                                >  2:181002‑M1/27‑36 (MQ=255)
 ccAAAATCGAAAACCAGGAAGGCCTCAACAtgtact                               >  2:988009‑M1/1‑30 (MQ=255)
 atcgtccaacaaaatgggtgcagtaCAACAACTTcg                               >  1:669229‑M1/26‑36 (MQ=255)
  tcgtccaacaaaatgggtgcagtaCAACAACTTcga                              >  1:703351‑M1/25‑36 (MQ=255)
   cgtccaacaaaatgggtgtagtaCAACAACTTcgac                             >  1:428739‑M1/24‑36 (MQ=255)
     tccaacaaaatgggtgcagtaCAACAACTTcgacga                           >  1:237377‑M1/22‑36 (MQ=255)
     aaTCGAAAACCAGGAAGGCCTCAACAtgtactgacc                           >  2:429035‑M1/1‑26 (MQ=255)
      ccaacaaaatgggtgcagtaCAACAACTTCGACGaa                          <  2:14550‑M1/16‑1 (MQ=255)
      ccaacaaaatgggtgcagtaCAACAACTTCGACGaa                          <  2:649258‑M1/16‑1 (MQ=255)
      aTCGAAAACCAGGAAGGCCTCAACAtgtactgaccc                          <  1:691462‑M1/36‑12 (MQ=255)
          aaaaCCAGGAAGGCCTCAACAtgtactgaccccaaa                      <  2:323199‑M1/36‑16 (MQ=255)
           aaagtgggtgcagtaCAACAACTTCGACGAAATCCt                     >  2:762145‑M1/16‑36 (MQ=255)
           aaaatgggtgcagtaCAACAACTTCGACGAAATCCt                     <  1:817429‑M1/21‑1 (MQ=255)
            aaatgggtgcagtaCAACAACTTCGACGAAATCCTc                    >  2:589228‑M1/15‑36 (MQ=255)
             aatgggtgcagtaCAACAACTTCGACGAAATCCTCg                   <  2:968700‑M1/23‑1 (MQ=255)
               tgggtgcagtaCAACAACTTCGACGAAATCCTCGaa                 >  2:544944‑M1/12‑36 (MQ=255)
                aggaggGCCTCAACAtgtactgaccccaaaaagttg                <  1:589780‑M1/36‑22 (MQ=255)
                aGGAAGGTCTCAACAtgtactgacaccaaaaagttg                >  2:279697‑M1/1‑15 (MQ=255)
                 ggtgcagtaCAACAACTTCGACGAAATCCTCGAAGc               <  2:781527‑M1/27‑1 (MQ=255)
                 ggAAGGCCTCAACAtgtactgaccccaaaaagttgg               <  1:651316‑M1/36‑23 (MQ=255)
                  gtgcagtaCAACAACTTCGACGAAATCCTCGAAGcc              <  2:314777‑M1/28‑1 (MQ=255)
                     cagtaCAACAACTTCGACGAAATCCTCGAAGCctct           <  2:284243‑M1/31‑1 (MQ=255)
                      agtaCAACAACTTCGACGAAATCCTCGCAGCCTCTg          <  1:381863‑M1/32‑1 (MQ=255)
                       gaaCAACAACTTCGACGAAATCCTCGAAGCCTCTGa         >  2:556875‑M1/4‑36 (MQ=255)
                        taaAACAACTTCGACGAAATCCTCGAAGCCTCTGAc        >  2:154502‑M1/4‑36 (MQ=255)
                           AACAACTTCGACGAAATCCTCGAAGCCTCTGACGGc     <  2:95388‑M1/36‑1 (MQ=255)
                            acaacTTCGACGAAATCCTCGAAGCCTCTGACGGca    >  2:715940/1‑36 (MQ=255)
                             caacTTCGACGAAATCCTCGAAGCCTCTGACGGcat   <  1:324202/36‑1 (MQ=255)
                              atgtactgaccccaaaaagttggacagttaaacacg  >  2:632853‑M1/1‑1 (MQ=255)
                              aacTTCGACGAAATCCTCGAAGCCTCTGACGGcatc  >  1:346493/1‑36 (MQ=255)
                              |                                   
TCCAAAATCGAAAACCAGGAAGGCCTCAACAACTTCGACGAAATCCTCGAAGCCTCTGACGGCATC  >  NC_012967/1733619‑1733684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.