New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	= 1733649	0 (0.000)	7 (0.730)	7/50	NT	100%	coding (685/1413 nt)	pykF	pyruvate kinase PykF
	?	NC_012967	2774435 =	NA (NA)					intergenic (‑67/+26)	ECB_RS13765/ECB_RS25125	type I toxin‑antitoxin system Hok family toxin/IS3 family transposase

GAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC  >  NC_012967/2774403‑2774466                                 |                                gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                              <  2:210461/36‑1 (MQ=255)   aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt                            >  2:636788/1‑36 (MQ=255)   aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt                            >  2:820090/1‑36 (MQ=255)   aTTGTTTGGGTTCGAAAGTAAGCCTCAGGTTGTACt                            >  2:610854/1‑36 (MQ=38)    ttGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACtc                           >  2:372372/1‑35 (MQ=255)       tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc                        <  1:324600/36‑1 (MQ=255)          gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                     <  2:805314/36‑1 (MQ=255)           ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                    <  2:870892/36‑1 (MQ=255)            gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaa                   <  2:478185/36‑1 (MQ=255)                gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt               >  2:747940/1‑36 (MQ=255)                 aaCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt              >  1:915363/1‑36 (MQ=255)                   cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg            <  1:453574/36‑1 (MQ=255)                    gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa           >  2:230400/1‑36 (MQ=255)                     tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc          <  1:907820/36‑1 (MQ=255)                        gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt       <  2:151088/36‑1 (MQ=255)                             aGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAac  >  2:671232/1‑36 (MQ=40)                                 |                                GAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC  >  NC_012967/2774403‑2774466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.