New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	= 1821528	0 (0.000)	7 (0.760)	6/48	NT	100%	coding (572/1041 nt)	ynjI	DUF1266 domain‑containing protein
	?	NC_012967	2774436 =	NA (NA)					intergenic (‑68/+25)	ECB_RS13765/ECB_RS25125	type I toxin‑antitoxin system Hok family toxin/IS3 family transposase

CTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012967/1821494‑1821528 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  >  NC_012967/2774436‑2774470                                                                        CTCCATGTTTGCTTTGAAGGTATTGGCTCCATGGTG                                    <  1:513012/36‑1        TTTGCTTTAAAGGTATTGGCTCCATGGTGTACTGtc                             >  1:532498/1‑34         TTGCTTTAAAGGTATTGGCTCCATGGTGTACTGACC                            <  1:224650/36‑1                AAAGGTATTGGCTCCATGGTGTACTGACCCCATAAA                     >  2:34333/1‑36                    GTATTGGCTCCATGGTGTACTGACCCCAAAAAGTTG                 <  1:537083/36‑1                         GGCTCCATGGTGTACTGACCCCAAAAAGTTGGACAG            >  2:934353/1‑36                          GCTCCATGGTGTACTGACCCCAAAAAGTTGGACAGT           >  1:680187/1‑36                             CCATGGTGTACTGACCCCAAAAAGTTGGACAGTTAA        >  2:157284/1‑36                               ATGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC      <  1:478875/36‑1                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  <  1:728909/36‑1                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  >  1:844983/1‑36                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  <  1:598790/36‑1                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  >  1:46213/1‑36                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  <  2:562151/36‑1                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  >  2:617478/1‑36                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  >  2:675070/1‑36                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  <  1:541234/36‑1                                                                        CTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012967/1821494‑1821528 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  >  NC_012967/2774436‑2774470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.