New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | = 1821528 | 0 (0.000) | 7 (0.760) | 6/48 | NT | 100% | coding (572/1041 nt) | ynjI | DUF1266 domain‑containing protein |
? | NC_012967 | 2774436 = | NA (NA) | intergenic (‑68/+25) | ECB_RS13765/ECB_RS25125 | type I toxin‑antitoxin system Hok family toxin/IS3 family transposase |
CTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/1821494‑1821528 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > NC_012967/2774436‑2774470 CTCCATGTTTGCTTTGAAGGTATTGGCTCCATGGTG < 1:513012/36‑1 TTTGCTTTAAAGGTATTGGCTCCATGGTGTACTGtc > 1:532498/1‑34 TTGCTTTAAAGGTATTGGCTCCATGGTGTACTGACC < 1:224650/36‑1 AAAGGTATTGGCTCCATGGTGTACTGACCCCATAAA > 2:34333/1‑36 GTATTGGCTCCATGGTGTACTGACCCCAAAAAGTTG < 1:537083/36‑1 GGCTCCATGGTGTACTGACCCCAAAAAGTTGGACAG > 2:934353/1‑36 GCTCCATGGTGTACTGACCCCAAAAAGTTGGACAGT > 1:680187/1‑36 CCATGGTGTACTGACCCCAAAAAGTTGGACAGTTAA > 2:157284/1‑36 ATGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:478875/36‑1 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA < 1:728909/36‑1 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 1:844983/1‑36 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA < 1:598790/36‑1 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 1:46213/1‑36 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA < 2:562151/36‑1 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 2:617478/1‑36 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 2:675070/1‑36 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA < 1:541234/36‑1 CTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/1821494‑1821528 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > NC_012967/2774436‑2774470 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |