New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | = 1821528 | 0 (0.000) | 7 (0.760) | 6/48 | NT | 100% | coding (572/1041 nt) | ynjI | DUF1266 domain‑containing protein |
? | NC_012967 | 2774436 = | NA (NA) | intergenic (‑68/+25) | ECB_RS13765/ECB_RS25125 | type I toxin‑antitoxin system Hok family toxin/IS3 family transposase |
GAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > NC_012967/2774403‑2774466 | gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa < 2:210461/36‑1 (MQ=255) aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt > 2:636788/1‑36 (MQ=255) aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt > 2:820090/1‑36 (MQ=255) aTTGTTTGGGTTCGAAAGTAAGCCTCAGGTTGTACt > 2:610854/1‑36 (MQ=38) ttGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACtc > 2:372372/1‑35 (MQ=255) tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc < 1:324600/36‑1 (MQ=255) gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa < 2:805314/36‑1 (MQ=255) ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa < 2:870892/36‑1 (MQ=255) gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaa < 2:478185/36‑1 (MQ=255) gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt > 2:747940/1‑36 (MQ=255) aaCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt > 1:915363/1‑36 (MQ=255) cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg < 1:453574/36‑1 (MQ=255) gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa > 2:230400/1‑36 (MQ=255) tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc < 1:907820/36‑1 (MQ=255) gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt < 2:151088/36‑1 (MQ=255) aGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAac > 2:671232/1‑36 (MQ=40) | GAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > NC_012967/2774403‑2774466 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |