| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 1821528 | 0 (0.000) | 7 (0.760) | 6/48 | NT | 100% | coding (572/1041 nt) | ynjI | DUF1266 domain‑containing protein |
| ? | NC_012967 | 2774436 = | NA (NA) | intergenic (‑68/+25) | ECB_RS13765/ECB_RS25125 | type I toxin‑antitoxin system Hok family toxin/IS3 family transposase | |||||
CTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAA > NC_012967/1821494‑1821563 | tttcatcgtccaacaaactgggtgcagtaCATGGTc < 1:699940‑M1/7‑1 (MQ=255)ctccATGTTTGCTTTGAAGGTATTGGCTCCATGGTg < 1:513012‑M1/36‑2 (MQ=255) ttcatcgtccaacaaaatgggtgcagtaCATGGTCg < 2:156332‑M1/8‑1 (MQ=255) catcgtccaacaaaatgggtgcagtaCATGGTCGcc > 1:231739‑M1/27‑36 (MQ=255) cgtccaacaaaatgggtgcagtaCATGGTCGCCaga > 2:747815‑M1/24‑36 (MQ=255) tttGCTTTAAAGGTATTGGCTCCATGGTgtactgtc > 1:532498‑M1/1‑28 (MQ=255) ttGCTTTAAAGGTATTGGCTCCATGGTgtactgacc < 1:224650‑M1/36‑10 (MQ=255) ccaacaaaatgggtgcagtaCATGGTCGCCagaaag < 2:672536‑M1/16‑1 (MQ=255) aacaaaatgggtgcagtaCATGGTCGCCagaaagaa > 2:454845‑M1/19‑36 (MQ=255) caaaatgggtgcagtaCATGGTCGCCAGAAAGaaaa < 2:639754‑M1/20‑1 (MQ=255) caaaatgggtgcagtaCATGGTCGCCAGAAAGaaaa < 1:943853‑M1/20‑1 (MQ=255) aaaatgggtgcagtaCATGGTCGCCAGAAAGAAAAt > 2:862896‑M1/16‑36 (MQ=255) aaaGGTATTGGCTCCATGGTgtactgaccccataaa > 2:34333‑M1/1‑20 (MQ=255) tgggtgcagtaCATGGTCGCCAGAAAGAAAATGCTc < 1:509459‑M1/25‑1 (MQ=255) gTATTGGCTCCATGGTgtactgaccccaaaaagttg < 1:537083‑M1/36‑21 (MQ=255) gcagtaCATGGTCGCCAGAAAGAAAATGCTCCATTa > 1:621987‑M1/7‑36 (MQ=255) ggCTCCATGGTgtactgaccccaaaaagttggacag > 2:934353‑M1/1‑11 (MQ=255) gCTCCATGGTgtactgaccccaaaaagttggacagt > 1:680187‑M1/1‑10 (MQ=255) gtaCATGGTCGCCAGAAAGAAAATGCTCCATTAAgg < 1:719203‑M1/33‑1 (MQ=255) ccATGGTgtactgaccccaaaaagttggacagttaa > 2:157284‑M1/1‑7 (MQ=255) aCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGca < 1:477‑M1/35‑1 (MQ=255) aCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGca < 2:384198‑M1/35‑1 (MQ=255) CATGGTCGCCAGAAAGAAAATGCTCCATTTAGGcac < 2:696462‑M1/36‑1 (MQ=255) aTGGTgtactgaccccaaaaagttggacagttaaac < 1:478875‑M1/36‑32 (MQ=255) tGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa < 2:372550/36‑1 (MQ=255) tgtactgaccccaaaaagttggacagttaaacacga > 2:617478‑M1/1‑1 (MQ=255) tgtactgaccccaaaaagttggacagttaaacacga < 1:541234‑M1/36‑36 (MQ=255) tgtactgaccccaaaaagttggacagttaaacacga < 2:562151‑M1/36‑36 (MQ=255) tgtactgaccccaaaaagttggacagttaaacacga > 2:675070‑M1/1‑1 (MQ=255) tgtactgaccccaaaaagttggacagttaaacacga < 1:598790‑M1/36‑36 (MQ=255) tgtactgaccccaaaaagttggacagttaaacacga < 1:728909‑M1/36‑36 (MQ=255) tgtactgaccccaaaaagttggacagttaaacacga > 1:46213‑M1/1‑1 (MQ=255) tgtactgaccccaaaaagttggacagttaaacacga > 1:844983‑M1/1‑1 (MQ=255) | CTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAA > NC_012967/1821494‑1821563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |