| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 2772857 = | NA (NA) | 13 (1.540) | 7/44 | NT | 93.7% | intergenic (+378/‑54) | iap/ECB_RS13760 | alkaline phosphatase isozyme conversion aminopeptidase/IS4 family transposase |
| ? | NC_012967 | = 4524530 | 1 (0.100) | coding (502/549 nt) | fimA | type 1 fimbrial major subunit FimA | |||||
AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATggg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/2772891‑2772857‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAA < NC_012967/4524530‑4524494 AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATG > 1:786760/1‑36AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATG < 1:220976/36‑1 aGCGTAATACCACAACCCTTAAGTTAGCGCTTATGG < 2:196955/35‑1 GGCGTAATACCACAACCCTTAAGTTAGCGCTTTTGG < 1:318593/36‑1 GGCGTAATACCACAACCCTTAAGTTAGCGCTTATGG < 1:690732/36‑1 GCGTAATACCGCGACCCTTAAGTTAGCGCTTATGGG < 2:738811/36‑1 GCGTAATACCACAACCCTTAAGTTAGCGCTTATGGG < 2:666158/36‑1 GCGTAATACCACAACCCTTAAGTTAGCGCTTACGGG > 2:247702/1‑36 TAATACCACAACCCTTAAGTTAGCGCTTATGGGTTG < 1:878329/36‑1 ATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCG < 2:628678/36‑1 ATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCG < 1:275637/36‑1 ATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCG > 1:983902/1‑36 CACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCC > 1:136726/1‑36 CACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCC > 2:319296/1‑36 ACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCC > 1:434581/1‑36 ACCCTTAAGTTGGCGCTTCTGGGTTGCGGCCCCGGT > 2:118974/1‑36 ACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGT > 2:473297/1‑36 CCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTT < 1:700731/36‑1 CCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTT < 1:316591/36‑1 CCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTT < 1:73382/36‑1 ctaAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGC < 2:184165/33‑1 TAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAA > 1:943054/1‑36 TAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAA < 1:321364/36‑1 CGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGC > 1:981573/1‑36 CGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGC > 1:81132/1‑36 TGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGG > 1:642942/1‑36 GGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAA > 2:122553/1‑36 GGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAA < 2:659965/36‑1 AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATggg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/2772891‑2772857‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAA < NC_012967/4524530‑4524494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |