BRESEQ :: Evidence
New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 2772857 =NA (NA)13 (1.540) 7/44 NT 93.7% intergenic (+378/‑54) iap/ECB_RS13760 alkaline phosphatase isozyme conversion aminopeptidase/IS4 family transposase
?NC_012967 = 4524530 1 (0.100)coding (502/549 nt) fimA type 1 fimbrial major subunit FimA

AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATggg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/2772891‑2772857
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAA  <  NC_012967/4524530‑4524494
                                                                        
AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATG                                      >  1:786760/1‑36
AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATG                                      <  1:220976/36‑1
 aGCGTAATACCACAACCCTTAAGTTAGCGCTTATGG                                     <  2:196955/35‑1
 GGCGTAATACCACAACCCTTAAGTTAGCGCTTTTGG                                     <  1:318593/36‑1
 GGCGTAATACCACAACCCTTAAGTTAGCGCTTATGG                                     <  1:690732/36‑1
  GCGTAATACCGCGACCCTTAAGTTAGCGCTTATGGG                                    <  2:738811/36‑1
  GCGTAATACCACAACCCTTAAGTTAGCGCTTATGGG                                    <  2:666158/36‑1
  GCGTAATACCACAACCCTTAAGTTAGCGCTTACGGG                                    >  2:247702/1‑36
     TAATACCACAACCCTTAAGTTAGCGCTTATGGGTTG                                 <  1:878329/36‑1
       ATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCG                               <  2:628678/36‑1
       ATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCG                               <  1:275637/36‑1
       ATACCACAACCCTTAAGTTAGCGCTTATGGGTTGCG                               >  1:983902/1‑36
           CACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCC                           >  1:136726/1‑36
           CACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCC                           >  2:319296/1‑36
            ACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCC                          >  1:434581/1‑36
               ACCCTTAAGTTGGCGCTTCTGGGTTGCGGCCCCGGT                       >  2:118974/1‑36
               ACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGT                       >  2:473297/1‑36
                CCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTT                      <  1:700731/36‑1
                CCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTT                      <  1:316591/36‑1
                CCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTT                      <  1:73382/36‑1
                  ctaAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGC                    <  2:184165/33‑1
                    TAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAA                  >  1:943054/1‑36
                    TAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAA                  <  1:321364/36‑1
                            CGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGC          >  1:981573/1‑36
                            CGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACGC          >  1:81132/1‑36
                                  TGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGG    >  1:642942/1‑36
                                    GGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAA  >  2:122553/1‑36
                                    GGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAA  <  2:659965/36‑1
                                                                        
AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATggg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/2772891‑2772857
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAA  <  NC_012967/4524530‑4524494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.