New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	2772857 =	NA (NA)	13 (1.540)	7/44	NT	93.7%	intergenic (+378/‑54)	iap/ECB_RS13760	alkaline phosphatase isozyme conversion aminopeptidase/IS4 family transposase
	?	NC_012967	= 4524530	1 (0.100)					coding (502/549 nt)	fimA	type 1 fimbrial major subunit FimA

TCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTT  >  NC_012967/4524495‑4524565                                    |                                    ttcaacccttaagttagcgcttatGGGCCGCAcccc                                     >  2:439343‑M2/25‑36 (MQ=255)  ccAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCa                                    >  1:642942‑M2/1‑35 (MQ=255)     acccttaagttagcgcttatGGGCCGCAACCCCggg                                 <  2:510864‑M2/16‑1 (MQ=255)      cccttaagttagcgcttatGGGCCGCAACCCCGGGt                                <  2:362157‑M2/17‑1 (MQ=255)        gcgTTATTTTGCAACCGGGGCCGCAACCCataagcg                              >  1:981573‑M2/1‑29 (MQ=255)        gcgTTATTTTGCAACCGGGGCCGCAACCCataagcg                              >  1:81132‑M2/1‑29 (MQ=255)        cttaagttagcgcttatAGGCCGCAACCCCGGGtgc                              <  2:978159‑M2/19‑1 (MQ=255)          taagttagcgcttatGGGCCGCAACCCCGGGtgctg                            <  1:549587‑M2/21‑1 (MQ=255)           aagttagcgcttatGGGCCGCAACCCCGGGtgctgc                           <  1:258081‑M2/22‑1 (MQ=255)             gttagcgcttatGGGCCGCAACCCCGGGTGCTGCTa                         <  1:853643‑M2/24‑1 (MQ=255)              ttagcgcttatGGGCCGCAACCCCGGGTGCTGCTaa                        <  1:287128‑M2/25‑1 (MQ=255)               tggcgcttatGGGCCGGATCCCCGGGTGCTGCTAAt                       <  1:630435‑M2/26‑1 (MQ=255)               tagcgcttatGGGCCGCAACCCCGGGTGCTGCtaac                       >  1:860956‑M2/11‑35 (MQ=255)                ttGCAACCGGGGCCGCAACCCataagcgctaactta                      >  1:943054‑M2/1‑21 (MQ=255)                ttGCAACCGGGGCCGCAACCCataagcgctaactta                      <  1:321364‑M2/36‑16 (MQ=255)                  gCAACCGGGGCCGCAACCCataagcgctaactttag                    <  2:184165‑M2/36‑18 (MQ=255)                  cgcttatGGGCCGCAACCCCGGGTGCTGCTAATGCg                    >  2:876436‑M2/8‑36 (MQ=255)                   gcttatGGGCCCCAACCCCGGGTGCTGCTAATGCgg                   <  1:170787‑M2/30‑1 (MQ=255)                    cttatGGGCCGCAACCCCGGGTGCTGCTAATGCGGa                  <  2:623249‑M2/31‑1 (MQ=255)                    aaCCGGGGCCGCAACCCataagcgctaacttaaggg                  <  1:700731‑M2/36‑20 (MQ=255)                    aaCCGGGGCCGCAACCCataagcgctaacttaaggg                  <  1:316591‑M2/36‑20 (MQ=255)                    aaCCGGGGCCGCAACCCataagcgctaacttaaggg                  <  1:73382‑M2/36‑20 (MQ=255)                     ttatGGGCCGCAACCCCGGGTGCTGCTAATGCGGAt                 <  1:271752‑M2/32‑1 (MQ=255)                     aCCGGGGCCGCAACCCataagcgctaacttaagggt                 >  2:473297‑M2/1‑16 (MQ=255)                     aCCGGGGCCGCAACCCagaagcgccaacttaagggt                 >  2:118974‑M2/1‑16 (MQ=255)                      tatGGGCCGCAACCCCGGGTGCTGCTAATGCGGATg                <  2:168132‑M2/33‑1 (MQ=255)                      tatGGGCCGCAACCCCGGGTGCTGCTAATGCGGATg                <  1:878675‑M2/33‑1 (MQ=255)                        ggggCCGCAACCCataagcgctaacttaagggttgt              >  1:434581‑M2/1‑13 (MQ=255)                         gggCCGCAACCCataagcgctaacttaagggttgtg             >  1:136726‑M2/1‑12 (MQ=255)                         gggCCGCAACCCataagcgctaacttaagggttgtg             >  2:319296‑M2/1‑12 (MQ=255)                          GGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGAc            <  2:78871‑M2/36‑1 (MQ=255)                             cGCAACCCataagcgctaacttaagggttgtggtat         >  1:983902‑M2/1‑8 (MQ=255)                             cGCAACCCataagcgctaacttaagggttgtggtat         <  2:628678‑M2/36‑29 (MQ=255)                             cGCAACCCataagcgctaacttaagggttgtggtat         <  1:275637‑M2/36‑29 (MQ=255)                              gCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTc        >  2:588389/1‑36 (MQ=255)                               cAACCCataagcgctaacttaagggttgtggtatta       <  1:878329‑M2/36‑31 (MQ=255)                                aaCCCCGGGTGCTGCTAATGCGGATGCGACCTTCaa      <  1:85986/36‑1 (MQ=255)                                 aCCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAg     >  1:639954/1‑36 (MQ=255)                                  cccgtaagcgctaacttaagggttgtggtattacgc    >  2:247702‑M2/1‑3 (MQ=255)                                  ccccGGGTGCTGCTAATGCGGATGCGACCTTCAAgg    <  2:768222/36‑1 (MQ=255)                                  ccccGGGTGCTGCTAATGCGGATGCGACCCTCAAgg    >  2:924406/1‑36 (MQ=39)                                  cccataagcgctaacttaagggttgtggtattacgc    <  2:666158‑M2/36‑34 (MQ=255)                                  cccataagcgctaacttaagggtcgcggtattacgc    <  2:738811‑M2/36‑34 (MQ=255)                                   ccataagcgctaacttaagggttgtggtattacgct   <  2:196955‑M2/36‑35 (MQ=255)                                   ccataagcgctaacttaagggttgtggtattacgcc   <  1:690732‑M2/36‑35 (MQ=255)                                   ccaaaagcgctaacttaagggttgtggtattacgcc   <  1:318593‑M2/36‑35 (MQ=255)                                    ccGGGTGCTGCTAATGCGGATGCGACCTTCAAGGtt  <  1:405391/36‑1 (MQ=255)                                    cataagcgctaacttaagggttgtggtattacgcct  <  1:220976‑M2/36‑36 (MQ=255)                                    cataagcgctaacttaagggttgtggtattacgcct  >  1:786760‑M2/1‑1 (MQ=255)                                    |                                    TCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTT  >  NC_012967/4524495‑4524565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.