New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | 2772857 = | NA (NA) | 13 (1.540) | 7/44 | NT | 93.7% | intergenic (+378/‑54) | iap/ECB_RS13760 | alkaline phosphatase isozyme conversion aminopeptidase/IS4 family transposase |
? | NC_012967 | = 4524530 | 1 (0.100) | coding (502/549 nt) | fimA | type 1 fimbrial major subunit FimA |
GGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGT > NC_012967/2772827‑2772882 | ggAACACCCTGAACGGTGGGGAAAAACCCCATAAgc > 1:469934/1‑36 (MQ=255) cagAACAGTGAGGAAAAACCCCATAAGCGCTAACtt < 1:722775/34‑1 (MQ=17) cTGAACGGTGGGTAAAAACCCCATAAGCGCTAACtt < 2:789720/36‑1 (MQ=21) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAggg > 2:868949/1‑36 (MQ=255) gTGGAGAAAAACCCCATAAGCGCTAACTTAAGGGtt < 1:637595/36‑1 (MQ=14) gAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 2:254619/36‑1 (MQ=40) | GGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGT > NC_012967/2772827‑2772882 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |