BRESEQ :: Evidence
New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 = 2774193NA (NA)13 (1.540) 11/44 NT 93.7% intergenic (+170/+23) ECB_RS13760/ECB_RS13765 IS4 family transposase/type I toxin‑antitoxin system Hok family toxin
?NC_012967 4524519 = 1 (0.100)coding (491/549 nt) fimA type 1 fimbrial major subunit FimA

TCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATggg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012967/2774159‑2774193
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGAC  >  NC_012967/4524519‑4524555
                                                                        
TCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG                                      <  2:147795/36‑1
TCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG                                      <  2:884550/36‑1
TCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG                                      <  1:177491/36‑1
TCTTCAGATGGTTCAACCCTTAAGTTAGCGCTCATG                                      >  2:269196/1‑36
 CTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGG                                     >  1:286915/1‑36
  TTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGG                                    <  1:14917/36‑1
  TTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGG                                    >  2:118183/1‑36
  TTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGG                                    >  2:112208/1‑36
     AGATGGTTCAACCCTTAAGTTAGCGCTTATGGGCCG                                 >  2:300782/1‑36
       ATGGTTCAACCCTTAAGTTAGCGCTTATGGGCCGCA                               <  2:527668/36‑1
        TGGTTCAACCCTTAAGTTAGCGCTTATGGGCCGCAA                              <  2:782562/36‑1
           TTCAACCCTTAAGTTAGCGCTTATGGGCCGCACCCC                           >  2:439343/1‑36
               ACCCTTAAGTTAGCGCTTATGGGCCGCAACCCCGGG                       <  2:510864/36‑1
                CCCTTAAGTTAGCGCTTATGGGCCGCAACCCCGGGT                      <  2:362157/36‑1
                  CTTAAGTTAGCGCTTATAGGCCGCAACCCCGGGTGC                    <  2:978159/36‑1
                    TAAGTTAGCGCTTATGGGCCGCAACCCCGGGTGCTG                  <  1:549587/36‑1
                     AAGTTAGCGCTTATGGGCCGCAACCCCGGGTGCTGC                 <  1:258081/36‑1
                       GTTAGCGCTTATGGGCCGCAACCCCGGGTGCTGCTA               <  1:853643/36‑1
                        TTAGCGCTTATGGGCCGCAACCCCGGGTGCTGCTAA              <  1:287128/36‑1
                         tgGCGCTTATGGGCCGGATCCCCGGGTGCTGCTAAT             <  1:630435/34‑1
                         TAGCGCTTATGGGCCGCAACCCCGGGTGCTGCTAAc             >  1:860956/1‑35
                            CGCTTATGGGCCGCAACCCCGGGTGCTGCTAATGCG          >  2:876436/1‑36
                             GCTTATGGGCCCCAACCCCGGGTGCTGCTAATGCGG         <  1:170787/36‑1
                              CTTATGGGCCGCAACCCCGGGTGCTGCTAATGCGGA        <  2:623249/36‑1
                               TTATGGGCCGCAACCCCGGGTGCTGCTAATGCGGAT       <  1:271752/36‑1
                                TATGGGCCGCAACCCCGGGTGCTGCTAATGCGGATG      <  2:168132/36‑1
                                TATGGGCCGCAACCCCGGGTGCTGCTAATGCGGATG      <  1:878675/36‑1
                                    GGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGAC  <  2:78871/36‑1
                                                                        
TCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATggg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012967/2774159‑2774193
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGAC  >  NC_012967/4524519‑4524555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.