New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	= 2774193	NA (NA)	13 (1.540)	11/44	NT	93.7%	intergenic (+170/+23)	ECB_RS13760/ECB_RS13765	IS4 family transposase/type I toxin‑antitoxin system Hok family toxin
	?	NC_012967	4524519 =	1 (0.100)					coding (491/549 nt)	fimA	type 1 fimbrial major subunit FimA

GATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCG  >  NC_012967/2774165‑2774226                             |                                  gATGGTTCAACCCTTAAGTTAGCGCTTATGGGtttt                            <  2:265220/36‑1 (MQ=255)   tGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTAc                          >  2:210398/1‑36 (MQ=255)       tCAACCCTTAAGTTAGCGCTTATGGGTTTTAccccc                      <  1:487357/36‑1 (MQ=255)         atcccTTAATTTAGCGCTTATGGGTTTTACCCCcgc                    <  1:250212/34‑1 (MQ=18)              ttAAGTTAGCGCTTATTGGTTTTACCCCCGCgtggt               >  1:795468/1‑36 (MQ=25)              ttAAGTTAGCGCTTATGGGTTTTACCCCCGCgtggt               >  1:774021/1‑36 (MQ=255)                gaGTTAGCGCTTATGGGTTTTACCCCCGCGtggtgg             <  1:664854/35‑1 (MQ=255)                aaGTTAGCGCTTATGGGTTTTACCCCCGCGtggtgg             >  2:622475/1‑36 (MQ=255)                   ttAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTa          <  1:60707/36‑1 (MQ=255)                           tATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCg  >  1:422645/1‑36 (MQ=255)                             |                                  GATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCG  >  NC_012967/2774165‑2774226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.