New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	= 2774193	NA (NA)	13 (1.540)	11/44	NT	93.7%	intergenic (+170/+23)	ECB_RS13760/ECB_RS13765	IS4 family transposase/type I toxin‑antitoxin system Hok family toxin
	?	NC_012967	4524519 =	1 (0.100)					coding (491/549 nt)	fimA	type 1 fimbrial major subunit FimA

TACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGA  >  NC_012967/4524484‑4524554                                    |                                    tcttcagatggttcaacccttaagttagcgcttatg                                     <  2:884550‑M2/1‑1 (MQ=255) tcttcagatggttcaacccttaagttagcgcttatg                                     <  1:177491‑M2/1‑1 (MQ=255) tcttcagatggttcaacccttaagttagcgcttatg                                     <  2:147795‑M2/1‑1 (MQ=255) tcttcagatggttcaacccttaagttagcgctcatg                                     >  2:269196‑M2/36‑36 (MQ=255)  tctaTTCCGTTCCAGGCGCGTTATTTTGCAACCggg                                    <  1:878829/33‑1 (MQ=255)  cttcagatggttcaacccttaagttagcgcttatgg                                    >  1:286915‑M2/35‑36 (MQ=255)  aCCATTCCGTTCCAGGCGCGTTATTTTGCAACCggg                                    <  1:356736/36‑1 (MQ=255)  aCCATTCCGTTCCAGGCGCGTTATTTTGCAACCggg                                    >  1:73933/1‑36 (MQ=255)   ttcagatggttcaacccttaagttagcgcttatggg                                   >  2:118183‑M2/34‑36 (MQ=255)   ttcagatggttcaacccttaagttagcgcttatggg                                   <  1:14917‑M2/3‑1 (MQ=255)   ttcagatggttcaacccttaagttagcgcttatggg                                   >  2:112208‑M2/34‑36 (MQ=255)    cATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGc                                  <  2:60182/36‑1 (MQ=255)     aTTCCGTTCCAGGCGCGTTATTTTGCAACCgggaga                                 >  2:878837/1‑33 (MQ=255)      agatggttcaacccttaagttagcgcttatGGGCCg                                >  2:300782‑M2/31‑36 (MQ=255)        atggttcaacccttaagttagcgcttatGGGCCGCa                              <  2:527668‑M2/8‑1 (MQ=255)         tggttcaacccttaagttagcgcttatGGGCCGCaa                             <  2:782562‑M2/9‑1 (MQ=255)           ttCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACC                           >  2:122553‑M2/1‑36 (MQ=255)           ttCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACC                           <  2:659965‑M2/36‑1 (MQ=255)           ttCCAAGCGCGTTTTTTTGCAACCGGGGCAGCAAcc                           <  1:914940/36‑1 (MQ=16)            ttcaacccttaagttagcgcttatGGGCCGCAcccc                          >  2:439343‑M2/25‑36 (MQ=255)             ccAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCa                         >  1:642942‑M2/1‑35 (MQ=255)                acccttaagttagcgcttatGGGCCGCAACCCCggg                      <  2:510864‑M2/16‑1 (MQ=255)                 cccttaagttagcgcttatGGGCCGCAACCCCGGGt                     <  2:362157‑M2/17‑1 (MQ=255)                   gcgTTATTTTGCAACCGGGGCCGCAACCCataagcg                   >  1:81132‑M2/1‑29 (MQ=255)                   gcgTTATTTTGCAACCGGGGCCGCAACCCataagcg                   >  1:981573‑M2/1‑29 (MQ=255)                   cttaagttagcgcttatAGGCCGCAACCCCGGGtgc                   <  2:978159‑M2/19‑1 (MQ=255)                     taagttagcgcttatGGGCCGCAACCCCGGGtgctg                 <  1:549587‑M2/21‑1 (MQ=255)                      aagttagcgcttatGGGCCGCAACCCCGGGtgctgc                <  1:258081‑M2/22‑1 (MQ=255)                        gttagcgcttatGGGCCGCAACCCCGGGTGCTGCTa              <  1:853643‑M2/24‑1 (MQ=255)                         ttagcgcttatGGGCCGCAACCCCGGGTGCTGCTaa             <  1:287128‑M2/25‑1 (MQ=255)                          tggcgcttatGGGCCGGATCCCCGGGTGCTGCTAAt            <  1:630435‑M2/26‑1 (MQ=255)                          tagcgcttatGGGCCGCAACCCCGGGTGCTGCtaac            >  1:860956‑M2/11‑35 (MQ=255)                           ttGCAACCGGGGCCGCAACCCataagcgctaactta           >  1:943054‑M2/1‑21 (MQ=255)                           ttGCAACCGGGGCCGCAACCCataagcgctaactta           <  1:321364‑M2/36‑16 (MQ=255)                             gCAACCGGGGCCGCAACCCataagcgctaactttag         <  2:184165‑M2/36‑18 (MQ=255)                             cgcttatGGGCCGCAACCCCGGGTGCTGCTAATGCg         >  2:876436‑M2/8‑36 (MQ=255)                              gcttatGGGCCCCAACCCCGGGTGCTGCTAATGCgg        <  1:170787‑M2/30‑1 (MQ=255)                               cttatGGGCCGCAACCCCGGGTGCTGCTAATGCGGa       <  2:623249‑M2/31‑1 (MQ=255)                               aaCCGGGGCCGCAACCCataagcgctaacttaaggg       <  1:73382‑M2/36‑20 (MQ=255)                               aaCCGGGGCCGCAACCCataagcgctaacttaaggg       <  1:700731‑M2/36‑20 (MQ=255)                               aaCCGGGGCCGCAACCCataagcgctaacttaaggg       <  1:316591‑M2/36‑20 (MQ=255)                                ttatGGGCCGCAACCCCGGGTGCTGCTAATGCGGAt      <  1:271752‑M2/32‑1 (MQ=255)                                aCCGGGGCCGCAACCCataagcgctaacttaagggt      >  2:473297‑M2/1‑16 (MQ=255)                                aCCGGGGCCGCAACCCagaagcgccaacttaagggt      >  2:118974‑M2/1‑16 (MQ=255)                                 tatGGGCCGCAACCCCGGGTGCTGCTAATGCGGATg     <  1:878675‑M2/33‑1 (MQ=255)                                 tatGGGCCGCAACCCCGGGTGCTGCTAATGCGGATg     <  2:168132‑M2/33‑1 (MQ=255)                                   ggggCCGCAACCCataagcgctaacttaagggttgt   >  1:434581‑M2/1‑13 (MQ=255)                                    gggCCGCAACCCataagcgctaacttaagggttgtg  >  2:319296‑M2/1‑12 (MQ=255)                                    gggCCGCAACCCataagcgctaacttaagggttgtg  >  1:136726‑M2/1‑12 (MQ=255)                                    |                                    TACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGA  >  NC_012967/4524484‑4524554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.