| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 3630716 | NA (NA) | 11 (1.140) | 9/50 | NT | NA | intergenic (‑171/‑305) | ECB_RS25605/yhjV | type I toxin‑antitoxin system toxin Ldr family protein/amino acid permease |
| ? | NC_012967 | = 3652533 | NA (NA) | intergenic (+26/+253) | ECB_RS25190/glyS | IS3 family transposase/glycine‑‑tRNA ligase subunit beta | |||||
TTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTT > NC_012967/3652503‑3652562 | tttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt < 1:25821/36‑1 (MQ=255)tttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt > 2:708158/1‑36 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTg > 1:532705/1‑36 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGa > 2:206615/1‑36 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt < 2:4323/36‑1 (MQ=255) ccAACTTTTTGGGGTCAGTACAAACTTTGATTtata > 2:152383/1‑36 (MQ=255) cAACTTTTTGGGGTCAGTACAAACTTTGATTTATAg < 2:417568/36‑1 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 2:979637/36‑1 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 1:469920/36‑1 (MQ=255) aCTTTTTGGGGTCAGTACAAACTATGATTTATAGTc > 1:880788/1‑36 (MQ=25) cAGTACAAACTTTGATTTATAGTCAGGTGGGGCttt < 1:152372/36‑1 (MQ=255) | TTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTT > NC_012967/3652503‑3652562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |