BRESEQ :: Evidence
New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 = 3630716NA (NA)11 (1.140) 9/50 NT NA intergenic (‑171/‑305) ECB_RS25605/yhjV type I toxin‑antitoxin system toxin Ldr family protein/amino acid permease
?NC_012967 = 3652533 NA (NA)intergenic (+26/+253) ECB_RS25190/glyS IS3 family transposase/glycine‑‑tRNA ligase subunit beta

TTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTT  >  NC_012967/3652503‑3652562
                              |                             
tttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt                          <  1:25821/36‑1 (MQ=255)
tttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt                          >  2:708158/1‑36 (MQ=255)
  tAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTg                        >  1:532705/1‑36 (MQ=255)
   aaCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGa                       >  2:206615/1‑36 (MQ=255)
    aCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt                      <  2:4323/36‑1 (MQ=255)
         ccAACTTTTTGGGGTCAGTACAAACTTTGATTtata                 >  2:152383/1‑36 (MQ=255)
          cAACTTTTTGGGGTCAGTACAAACTTTGATTTATAg                <  2:417568/36‑1 (MQ=255)
           aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt               <  2:979637/36‑1 (MQ=255)
           aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt               <  1:469920/36‑1 (MQ=255)
            aCTTTTTGGGGTCAGTACAAACTATGATTTATAGTc              >  1:880788/1‑36 (MQ=25)
                        cAGTACAAACTTTGATTTATAGTCAGGTGGGGCttt  <  1:152372/36‑1 (MQ=255)
                              |                             
TTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTT  >  NC_012967/3652503‑3652562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.