New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	= 3630716	NA (NA)	11 (1.140)	9/50	NT	NA	intergenic (‑171/‑305)	ECB_RS25605/yhjV	type I toxin‑antitoxin system toxin Ldr family protein/amino acid permease
	?	NC_012967	= 3652533	NA (NA)					intergenic (+26/+253)	ECB_RS25190/glyS	IS3 family transposase/glycine‑‑tRNA ligase subunit beta

TTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTT > NC_012967/3652503‑3652562 | tttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt < 1:25821/36‑1 (MQ=255) tttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt > 2:708158/1‑36 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTg > 1:532705/1‑36 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGa > 2:206615/1‑36 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt < 2:4323/36‑1 (MQ=255) ccAACTTTTTGGGGTCAGTACAAACTTTGATTtata > 2:152383/1‑36 (MQ=255) cAACTTTTTGGGGTCAGTACAAACTTTGATTTATAg < 2:417568/36‑1 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 2:979637/36‑1 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 1:469920/36‑1 (MQ=255) aCTTTTTGGGGTCAGTACAAACTATGATTTATAGTc > 1:880788/1‑36 (MQ=25) cAGTACAAACTTTGATTTATAGTCAGGTGGGGCttt < 1:152372/36‑1 (MQ=255) | TTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTT > NC_012967/3652503‑3652562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.