BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_012967 3,894,998 Δ6,934 bp 100% rbsD–[mdtD] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [mdtD]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_012967 3894998 3901931 6934 13 [0] [0] 14 rbsD–[mdtD] rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[mdtD]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 = 38949970 (0.000)4 (0.470) 3/44 NT 100% intergenic (+27/‑161) ECB_RS25215/rbsD IS3 family transposase/D‑ribose pyranase
?NC_012967 3901932 = 0 (0.000)coding (488/1428 nt) mdtD multidrug transporter subunit MdtD

GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012967/3894963‑3894997
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG  >  NC_012967/3901932‑3901966
                                                                      
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG                                    <  2:92476/36‑1
 ttTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT                                   <  2:507901/34‑1
 tgcTTAACTGTCCAACTTCTTGGGGTCAGTACAGGT                                   >  2:192327/4‑36
  GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT                                  >  2:682036/1‑36
   TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTG                                 <  1:40355/36‑1
      AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC                              >  2:187745/1‑36
      AACTGTCCAACTTTTTGCGGTCAGTACAGGTTGCCC                              >  2:295431/1‑36
                CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG                    <  1:203217/36‑1
                      GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC              <  1:768231/36‑1
                               ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC     <  1:404236/36‑1
                                CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACG    >  1:947199/1‑36
                                  GGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG  >  1:776216/1‑36
                                  GGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG  >  2:695312/1‑36
                                                                      
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012967/3894963‑3894997
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG  >  NC_012967/3901932‑3901966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.