Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | NC_012967 | 3,894,998 | Δ6,934 bp | 100% | rbsD–[mdtD] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [mdtD] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_012967 | 3894998 | 3901931 | 6934 | 13 [0] | [0] 14 | rbsD–[mdtD] | rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[mdtD] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | = 3894997 | 0 (0.000) | 4 (0.470) | 3/44 | NT | 100% | intergenic (+27/‑161) | ECB_RS25215/rbsD | IS3 family transposase/D‑ribose pyranase |
? | NC_012967 | 3901932 = | 0 (0.000) | coding (488/1428 nt) | mdtD | multidrug transporter subunit MdtD |
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/3894963‑3894997 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > NC_012967/3901932‑3901966 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 2:92476/36‑1 ttTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 2:507901/34‑1 tgcTTAACTGTCCAACTTCTTGGGGTCAGTACAGGT > 2:192327/4‑36 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 2:682036/1‑36 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTG < 1:40355/36‑1 AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC > 2:187745/1‑36 AACTGTCCAACTTTTTGCGGTCAGTACAGGTTGCCC > 2:295431/1‑36 CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG < 1:203217/36‑1 GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:768231/36‑1 ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:404236/36‑1 CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACG > 1:947199/1‑36 GGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 1:776216/1‑36 GGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 2:695312/1‑36 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/3894963‑3894997 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > NC_012967/3901932‑3901966 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |