Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_012967	3,894,998	Δ6,934 bp	100%		rbsD–[mdtD]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [mdtD]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_012967	3894998	3901931	6934	13 [0]	[0] 14	rbsD–[mdtD]	rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[mdtD]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012967	= 3894997	0 (0.000)	4 (0.470)	3/44	NT	100%	intergenic (+27/‑161)	ECB_RS25215/rbsD	IS3 family transposase/D‑ribose pyranase
	?	NC_012967	3901932 =	0 (0.000)					coding (488/1428 nt)	mdtD	multidrug transporter subunit MdtD

CTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGG  >  NC_012967/3901897‑3901967                                    |                                    gtgtttaactgtccaactttttggggtcagtacagg                                     <  2:92476‑M2/1‑1 (MQ=255)  tttttaactgtccaactttttggggtcagtacagGt                                    <  2:507901‑M2/2‑1 (MQ=255)  tgcttaactgtccaacttcttggggtcagtacagGt                                    >  2:192327‑M2/35‑36 (MQ=255)   gtttaactgtccaactttttggggtcagtacagGtt                                   >  2:682036‑M2/34‑36 (MQ=255)    tttaactgtccaactttttggggtcagtacagGTTg                                  <  1:40355‑M2/4‑1 (MQ=255)       aactgtccaactttttggggtcagtacagGTTGccc                               >  2:187745‑M2/30‑36 (MQ=255)       aactgtccaactttttgcggtcagtacagGTTGccc                               >  2:295431‑M2/30‑36 (MQ=255)                 ctttttggggtcagtacagGTTGCCCAGGTGACCAg                     <  1:203217‑M2/17‑1 (MQ=255)                       ggggtcagtacagGTTGCCCAGGTGACCAGCAcgcc               <  1:768231‑M2/23‑1 (MQ=255)                                acagGTTGCCCAGGTGACCAGCACGCCGCCAAGAAc      <  1:404236‑M2/32‑1 (MQ=255)                                 cagGTTGCCCAGGTGACCAGCACGCCGCCAAGAACg     >  1:947199‑M2/4‑36 (MQ=255)                                   gGTTGCCCAGGTGACCAGCACGCCGCCAAGAACggg   >  1:776216‑M2/2‑36 (MQ=255)                                   gGTTGCCCAGGTGACCAGCACGCCGCCAAGAACggg   >  2:695312‑M2/2‑36 (MQ=255)                                    gTTGCCCAGGTGACCAGCACGCCGCCAAGAACgggg  <  1:353164/36‑1 (MQ=255)                                    |                                    CTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGG  >  NC_012967/3901897‑3901967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.