BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_012967 3,894,998 Δ6,934 bp 100% rbsD[mdtD] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [mdtD]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_012967 3894998 3901931 6934 13 [0] [0] 14 rbsD–[mdtD] rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[mdtD]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 = 38949970 (0.000)4 (0.470) 3/44 NT 100% intergenic (+27/‑161) ECB_RS25215/rbsD IS3 family transposase/D‑ribose pyranase
?NC_012967 3901932 = 0 (0.000)coding (488/1428 nt) mdtD multidrug transporter subunit MdtD

GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTTT  >  NC_012967/3894963‑3895032
                                  |                                   
gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGg                                    <  2:92476‑M1/36‑2 (MQ=255)
 tttttaaCTGTCCAACTTTTTGGGGTCAGTACAGgt                                   <  2:507901‑M1/34‑3 (MQ=255)
 tgcttaacTGTCCAACTTCTTGGGGTCAGTACAGgt                                   >  2:192327‑M1/4‑34 (MQ=255)
  gtTTAACTGTCCAACTTTTTGGGGTCAGTACAGgtt                                  >  2:682036‑M1/1‑33 (MQ=255)
   tttAACTGTCCAACTTTTTGGGGTCAGTACAGgttg                                 <  1:40355‑M1/36‑5 (MQ=255)
      aaCTGTCCAACTTTTTGGGGTCAGTACAGgttgccc                              >  2:187745‑M1/1‑29 (MQ=255)
      aaCTGTCCAACTTTTTGCGGTCAGTACAGgttgccc                              >  2:295431‑M1/1‑29 (MQ=255)
                cTTTTTGGGGTCAGTACAGgttgcccaggtgaccag                    <  1:203217‑M1/36‑18 (MQ=255)
                      ggggTCAGTACAGgttgcccaggtgaccagcacgcc              <  1:768231‑M1/36‑24 (MQ=255)
                               aCAGgttgcccaggtgaccagcacgccgccaagaac     <  1:404236‑M1/36‑33 (MQ=255)
                                cAGgttgcccaggtgaccagcacgccgccaagaacg    >  1:947199‑M1/1‑3 (MQ=255)
                                  ggttgcccaggtgaccagcacgccgccaagaacggg  >  1:776216‑M1/1‑1 (MQ=255)
                                  ggttgcccaggtgaccagcacgccgccaagaacggg  >  2:695312‑M1/1‑1 (MQ=255)
                                  |                                   
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTTT  >  NC_012967/3894963‑3895032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.