BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_012967 3,894,998 Δ6,934 bp 100% rbsD[mdtD] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [mdtD]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_012967 3894998 3901931 6934 13 [0] [0] 14 rbsD–[mdtD] rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[mdtD]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 = 38949970 (0.000)4 (0.470) 3/44 NT 100% intergenic (+27/‑161) ECB_RS25215/rbsD IS3 family transposase/D‑ribose pyranase
?NC_012967 3901932 = 0 (0.000)coding (488/1428 nt) mdtD multidrug transporter subunit MdtD

GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTTT > NC_012967/3894963‑3895032
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gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGg < 2:92476‑M1/36‑2 (MQ=255)
tttttaaCTGTCCAACTTTTTGGGGTCAGTACAGgt < 2:507901‑M1/34‑3 (MQ=255)
tgcttaacTGTCCAACTTCTTGGGGTCAGTACAGgt > 2:192327‑M1/4‑34 (MQ=255)
gtTTAACTGTCCAACTTTTTGGGGTCAGTACAGgtt > 2:682036‑M1/1‑33 (MQ=255)
tttAACTGTCCAACTTTTTGGGGTCAGTACAGgttg < 1:40355‑M1/36‑5 (MQ=255)
aaCTGTCCAACTTTTTGGGGTCAGTACAGgttgccc > 2:187745‑M1/1‑29 (MQ=255)
aaCTGTCCAACTTTTTGCGGTCAGTACAGgttgccc > 2:295431‑M1/1‑29 (MQ=255)
cTTTTTGGGGTCAGTACAGgttgcccaggtgaccag < 1:203217‑M1/36‑18 (MQ=255)
ggggTCAGTACAGgttgcccaggtgaccagcacgcc < 1:768231‑M1/36‑24 (MQ=255)
aCAGgttgcccaggtgaccagcacgccgccaagaac < 1:404236‑M1/36‑33 (MQ=255)
cAGgttgcccaggtgaccagcacgccgccaagaacg > 1:947199‑M1/1‑3 (MQ=255)
ggttgcccaggtgaccagcacgccgccaagaacggg > 1:776216‑M1/1‑1 (MQ=255)
ggttgcccaggtgaccagcacgccgccaagaacggg > 2:695312‑M1/1‑1 (MQ=255)
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GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTTT > NC_012967/3894963‑3895032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: